Study
Longitudinal monitoring of disease burden and response using ctDNA from dried blood spots in xenograft models
| Study ID | Alternative Stable ID | Type |
|---|---|---|
| EGAS00001006134 | Whole Genome Sequencing |
Study Description
Study Datasets 2 datasets.
Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data
| Dataset ID | Description | Technology | Samples |
|---|---|---|---|
| EGAD00001008650 |
This dataset contains 8 .bam files of shallow WGS (~0.1×) from fresh frozen tumour tissues of four matched patients and first generation PDX models. Sequencing reads were aligned to the 1000 Genomes Project GRCh37-derived reference genome using the BWA aligner (v.0.07.17; CRUK-CI alignment pipeline).
|
Illumina HiSeq 4000 | 8 |
| EGAD00001008651 |
This dataset contains paired-end fastq sequencing files (n=212) from shallow WGS of 106 dried blood spot (DBS) samples, containing 91 DBS collected from OV04 ovarian cancer PDX mice, 10 DBS collected from healthy non-tumour bearing NSG mice, and 5 DBS generated from whole blood samples from 4 OV04 ovarian cancer patients.
|
Illumina NovaSeq 6000 | 106 |
Who archives the data?
Publications
Citations
Retrieving...
Retrieving...
