Characterization of alternative promoter usage in advanced prostate cancer

Type: RNASeq
Archiver: European Genome-Phenome Archive (EGA)

1 Dataset 2 Publications

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD00001008799	This dataset includes fastq files for total RNAseq of 104 patient biopsies with metastatic castration resistant prostate cancer. The RNAseq libraries were rRNA depleted and sequenced at 150bp paired-end on Illumina Novaseq.	Illumina NovaSeq 6000	104

Publications	Citations
Single cell-transcriptomic analysis informs the lncRNA landscape in metastatic castration resistant prostate cancer. Saha D, Dang HX, Zhang M, Quigley DA, Feng FY, Maher CA. NPJ Genom Med 9: 2024 14	5
Integrative analysis of ultra-deep RNA-seq reveals alternative promoter usage as a mechanism of activating oncogenic programmes during prostate cancer progression. Zhang M, Sjöström M, Cui X, Foye A, Farh K, Shrestha R, Lundberg A, Dang HX, Li H, Febbo PG, Aggarwal R, Alumkal JJ, Small EJ, SU2C/PCF West Coast Prostate Cancer Dream Team, Maher CA, Feng FY, Quigley DA. Nat Cell Biol 26: 2024 1176-1186	7

Publications

Citations

Single cell-transcriptomic analysis informs the lncRNA landscape in metastatic castration resistant prostate cancer.
Saha D, Dang HX, Zhang M, Quigley DA, Feng FY, Maher CA. NPJ Genom Med 9: 2024 14

Integrative analysis of ultra-deep RNA-seq reveals alternative promoter usage as a mechanism of activating oncogenic programmes during prostate cancer progression.
Zhang M, Sjöström M, Cui X, Foye A, Farh K, Shrestha R, Lundberg A, Dang HX, Li H, Febbo PG, Aggarwal R, Alumkal JJ, Small EJ, SU2C/PCF West Coast Prostate Cancer Dream Team, Maher CA, Feng FY, Quigley DA. Nat Cell Biol 26: 2024 1176-1186