Copied to clipboard!

Low-input PCHi-C data in CD4+ T cells

Low-input PCHi-C data in CD4+ T cells from Malysheva et al.

Type: Epigenetics
Archive: European Genome-phenome Archive (EGA)

1 Dataset 1 Publication

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD50000001873	This dataset contains raw sequencing data from low-input PCHi-C in human primary CD4+ T cells isolated from healthy donors. The data are released as paired-end Illumina FASTQ files. Promoter Capture Hi-C used DpnII digestion and Tn5-based low-input library preparation, followed by targeted capture with custom-designed biotinylated RNA probes targeting most of the annotated gene promoters.	Illumina NovaSeq 6000	4

Publications	Citations
High-resolution promoter interaction analysis implicates genes involved in activation of type 3 innate lymphoid cells in immune disease risk. Malysheva V, Ray-Jones H, Lakes N, Brown RA, Cazares TA, Clay O, Ohayon DE, Artemov P, Wayman JA, Yang ZF, Della Rosa M, Petitjean C, Booth C, Ellaway JIJ, Barnes JR, Dangel AW, Saini A, Orchard WR, Chen X, Parameswaran S, Burden F, Frontini M, Nagano T, Fraser P, Schoenfelder S, Weirauch MT, Kottyan LC, Smith DF, Powell N, Weimer JM, Oltz EM, Wallace C, Miraldi ER, Waggoner SN, Spivakov M. Nat Genet 58: 2026 1953-1966	0

Publications

Citations

High-resolution promoter interaction analysis implicates genes involved in activation of type 3 innate lymphoid cells in immune disease risk.
Malysheva V, Ray-Jones H, Lakes N, Brown RA, Cazares TA, Clay O, Ohayon DE, Artemov P, Wayman JA, Yang ZF, Della Rosa M, Petitjean C, Booth C, Ellaway JIJ, Barnes JR, Dangel AW, Saini A, Orchard WR, Chen X, Parameswaran S, Burden F, Frontini M, Nagano T, Fraser P, Schoenfelder S, Weirauch MT, Kottyan LC, Smith DF, Powell N, Weimer JM, Oltz EM, Wallace C, Miraldi ER, Waggoner SN, Spivakov M. Nat Genet 58: 2026 1953-1966