Copied to clipboard!

Whole-genome sequencing and H3K4me3 profiling of plasma cell-free DNA

Epigenomic characterization of breast cancers by profiling circulating nucleosomes isolated from patient plasma using cell-free chromatin immunoprecipitation followed by sequencing (cfChIP-seq).

Type: Cancer Genomics
Archiver: European Genome-phenome Archive (EGA)

3 Datasets

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD50000002524	This dataset contains whole genome sequencing data generated from plasma cell-free DNA of metastatic breast cancer patients and healthy individuals. Sequencing was performed on Illumina platforms to an average depth of approximately 10× and the dataset includes raw sequencing reads in FASTQ format.	NextSeq 2000	77
EGAD50000002525	This dataset contains plasma cell-free nucleosome H3K4me3 chromatin immunoprecipitation sequencing (cfChIP-seq) from metastatic breast cancer patients and healthy individuals. Sequencing was performed on Illumina platforms and the dataset includes raw sequencing reads in FASTQ format.	NextSeq 2000	77
EGAD50000002526	This dataset contains bulk tissue RNA sequencing (RNA-seq) from six metastatic breast cancer patients. Sequencing was performed on Illumina platforms and includes raw FASTQ reads.	NextSeq 2000	6