DAC

DAC University of Cologne

Dac ID Contact Person Email Access Information
EGAC00001000064 Dr. Graziella Bosco DAC-info [at] uni-koeln [dot] de No additional information is available

This DAC controls 17 datasets:

Dataset ID Description Technology Samples
EGAD00001000716 RNAseq data, Publication Fernandez-Cuesta et al., 2014, CD74-NRG1 fusions in lung adenocarcinoma Illumina HiSeq 2000; 25
EGAD00010000526 SNP 6.0 arrays of small cell lung cancer Affymetrics_SNP_6.0- 63
EGAD00001000703 SCLC - Whole genome sequencing data Publication Peifer et al., 2012, Nature Genetics Illumina Genome Analyzer IIx; 29
EGAD00001000820 Fernandez-Cuesta et al, 2014, Nature Communication, Whole exome sequencing data set Illumina HiSeq 2000; 15
EGAD00001000813 Fernandez-Cuesta et al., 2014, Nature Communication, Whole genome sequencing was performed using a read length of 2x100 bp for all samples. On average, 110 Gb of sequence were produced per sample, aiming a mean coverage of 30x for both tumour and matched normal. Illumina HiSeq 2000; 30
EGAD00001000795 Fernandez-Cuesta et al, 2014, Nature Communication, RNA Sequencing data set Illumina HiSeq 2000; 69
EGAD00010000546 SNP 6.0 arrays of carcinoid samples Affymetrics_SNP_6.0- 74
EGAD00001000746 Fernandez-Cuesta et al., RNAseq data Pipline Illumina HiSeq 2000; 25
EGAD00010000554 SNP 6.0 arrays of small cell lung cancer 1032
EGAD00010000556 SNP 6.0 arrays of small cell lung cancer 0
EGAD00001001244 RNA-sequencing (RNA-seq) was performed with RNA extracted from fresh-frozen human tumor tissue samples. cDNA libraries were prepared from poly-A selected RNA applying the Illumina TruSeq protocol for mRNA. The libraries were then sequenced with a 2 x 100bp paired-end protocol to a minimum mean coverage of 30x of the annotated transcriptome. Illumina HiSeq 2000; 58
EGAD00001001273 Whole genome sequencing was performed with DNA extracted from fresh-frozen tumor and normal material. Short insert DNA libraries were prepared with the TruSeq DNA PCRfree sample preparation kit (Illumina) for paired-end sequencing at a minimum read length of 2x100bp. Human DNA libraries were sequenced to an average coverage of minimum 30x for both tumor and matched normal. Murine DNA libraries of tumor and matched normal were both sequenced to a coverage of 25x. Illumina HiSeq 2000; 100
EGAD00010000558 SNP 6.0 arrays of small cell lung cancer Affymetrix SNP 6.0 54
EGAD00001001431 SCLC - RNA sequencing data Publication Peifer et al., 2012, Nature Genetics Illumina HiSeq 2000; 15
EGAD00001003099 RNAseq data set (Mollaoglu et al., MYC drives progression of small cell lung cancer to a variant neuroendocrine subtype with vulnerability to Aurora kinase inhibition) Illumina HiSeq 2000;ILLUMINA 14
EGAD00001003316 RNAseq of LC2AD with AD80 or DMSO Plenker et al., Mechanistic insight into RET kinase inhibitors targeting the DFG-out conformation in RET-rearranged cancer Illumina HiSeq 2000;ILLUMINA 1
EGAD00001003464 For RNA-Seq total RNA was isolated following LDC67 or JQ1 treatment. 3’RNAseq libraries were prepared with QUANT SEQ FWD 3´mRNA-Seq Kit (Lexogen, Austria), sequenced on an Illumina HiSeq 4000 Illumina HiSeq 2000;ILLUMINA 3