| EGAD00001000716 |
RNAseq data, Publication Fernandez-Cuesta et al., 2014, CD74-NRG1 fusions in lung adenocarcinoma |
Illumina HiSeq 2000; |
25 |
| EGAD00010000526 |
SNP 6.0 arrays of small cell lung cancer |
Affymetrics_SNP_6.0- |
63 |
| EGAD00001000703 |
SCLC - Whole genome sequencing data
Publication Peifer et al., 2012, Nature Genetics |
Illumina Genome Analyzer IIx; |
29 |
| EGAD00001000820 |
Fernandez-Cuesta et al, 2014, Nature Communication, Whole exome sequencing data set |
Illumina HiSeq 2000; |
15 |
| EGAD00001000813 |
Fernandez-Cuesta et al., 2014, Nature Communication,
Whole genome sequencing was performed using a read length of 2x100 bp for all
samples. On average, 110 Gb of sequence were produced per sample, aiming a
mean coverage of 30x for both tumour and matched normal. |
Illumina HiSeq 2000; |
30 |
| EGAD00001000795 |
Fernandez-Cuesta et al, 2014, Nature Communication, RNA Sequencing data set |
Illumina HiSeq 2000; |
69 |
| EGAD00010000546 |
SNP 6.0 arrays of carcinoid samples |
Affymetrics_SNP_6.0- |
74 |
| EGAD00001000746 |
Fernandez-Cuesta et al., RNAseq data Pipline |
Illumina HiSeq 2000; |
25 |
| EGAD00010000554 |
SNP 6.0 arrays of small cell lung cancer |
|
1032 |
| EGAD00010000556 |
SNP 6.0 arrays of small cell lung cancer |
|
0 |
| EGAD00001001244 |
RNA-sequencing (RNA-seq) was performed with RNA extracted from fresh-frozen
human tumor tissue samples. cDNA libraries were prepared from poly-A selected
RNA applying the Illumina TruSeq protocol for mRNA. The libraries were then
sequenced with a 2 x 100bp paired-end protocol to a minimum mean coverage of 30x
of the annotated transcriptome. |
Illumina HiSeq 2000; |
58 |
| EGAD00001001273 |
Whole genome sequencing was performed with DNA extracted from fresh-frozen
tumor and normal material. Short insert DNA libraries were prepared with the TruSeq
DNA PCRfree sample preparation kit (Illumina) for paired-end sequencing at a
minimum read length of 2x100bp. Human DNA libraries were sequenced to an
average coverage of minimum 30x for both tumor and matched normal. Murine DNA
libraries of tumor and matched normal were both sequenced to a coverage of 25x. |
Illumina HiSeq 2000; |
100 |
| EGAD00010000558 |
SNP 6.0 arrays of small cell lung cancer |
Affymetrix SNP 6.0 |
54 |
| EGAD00001001431 |
SCLC - RNA sequencing data Publication Peifer et al., 2012, Nature Genetics |
Illumina HiSeq 2000; |
15 |
| EGAD00001003099 |
RNAseq data set (Mollaoglu et al., MYC drives progression of small cell lung cancer to a variant neuroendocrine subtype with vulnerability to Aurora kinase inhibition) |
Illumina HiSeq 2000;ILLUMINA |
14 |
| EGAD00001003316 |
RNAseq of LC2AD with AD80 or DMSO
Plenker et al., Mechanistic insight into RET kinase inhibitors targeting the DFG-out conformation in RET-rearranged cancer |
Illumina HiSeq 2000;ILLUMINA |
1 |
| EGAD00001003464 |
For RNA-Seq total RNA was isolated following LDC67 or JQ1 treatment. 3’RNAseq libraries were prepared with QUANT SEQ FWD 3´mRNA-Seq Kit (Lexogen, Austria), sequenced on an Illumina HiSeq 4000 |
Illumina HiSeq 2000;ILLUMINA |
3 |
