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Molecular Oncology Group, PICR

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Richard Marais
richard.marais@manchester.ac.uk

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This DAC controls 15 datasets

Dataset ID	Description	Technology	Samples
EGAD00001000372	We conducted whole genome sequencing and DNA SNP array of 12 uveal melanoma genomes and their matched DNA from blood. We also conducted RNA-seq of the 12 tumour samples.	Illumina HiSeq 2000	24
EGAD00001000775	Whole exome sequencing of 41 melanomas and normal DNA from Braf mutant mice: 15 tumours from UV exposed mice, 15 tumours from non-exposed mice and 11 from UV exposed, sunscreen-protected mice.	Illumina HiSeq 2000	80
EGAD00001000944	Whole Genome Sequencing of 5 acral melanomas and matched normal samples	Illumina HiSeq 2000	10
EGAD00001000945	NGS of 10 mucosal melanomas:Whole genome sequencing of 5 mucosal melanomas and matched normal DNAWhole exome sequencing of 5 mucosal melanomas and matched normal DNA	Illumina HiSeq 2000	20
EGAD00001001257	None	Illumina HiSeq 2000	3
EGAD00001001258	None	Illumina HiSeq 2000	5
EGAD00001001259	None	Illumina HiSeq 2000	2
EGAD00001001260	None	Illumina HiSeq 2000	2
EGAD00001003120	We used WGS (Complete Genomics) to characterise five metastatic tumours from a BRAF mutant melanoma patient who presented intrinsic resistance.	Complete Genomics	6
EGAD00001004466	Low pass WGS: 48 samples (5 blood samples from 6 patient data): 22 Tumour cores and 26 normal/benign cores (Next Seq )	NextSeq 500	48
EGAD00001004467	WES: 48 samples (5 blood samples from 6 patient data): 22 Tumour cores and 26 normal/benign cores (HiSeq)	Illumina HiSeq 2500	48
EGAD00001004468	Total RNA Seq: 15 Samples (2 patients (MF1 and MF3)) (HiSeq) and Poly A RNA Seq: 27 Samples (4 patients Normal and Tumour ) (HiSeq)	Illumina HiSeq 2500	42
EGAD00001006568	This dataset contains 20 whole genome sequences from 10 tumor-normal pairs from conjunctival melanomas.		20
EGAD00001007710	Transcriptomic sequencing on pre-immunotherapy melanoma patients.	Illumina HiSeq 2500	16
EGAD00010000468	Uveal melanoma matched Tumour and blood samples	Illumina HumanOmni2.5	24