DAC

Molecular Oncology Group, PICR

Dac ID Contact Person Email Access Information
EGAC00001000095 Richard Marais rmarais [at] picr [dot] man [dot] ac [dot] uk No additional information is available

This DAC controls 13 datasets:

Dataset ID Description Technology Samples
EGAD00001000372 We conducted whole genome sequencing and DNA SNP array of 12 uveal melanoma genomes and their matched DNA from blood. We also conducted RNA-seq of the 12 tumour samples. Illumina HiSeq 2000 24
EGAD00001000775 Whole exome sequencing of 41 melanomas and normal DNA from Braf mutant mice: 15 tumours from UV exposed mice, 15 tumours from non-exposed mice and 11 from UV exposed, sunscreen-protected mice. Illumina HiSeq 2000 80
EGAD00001000944 Whole Genome Sequencing of 5 acral melanomas and matched normal samples Illumina HiSeq 2000 10
EGAD00001000945 NGS of 10 mucosal melanomas:Whole genome sequencing of 5 mucosal melanomas and matched normal DNAWhole exome sequencing of 5 mucosal melanomas and matched normal DNA Illumina HiSeq 2000 20
EGAD00001001257 NA Illumina HiSeq 2000 3
EGAD00001001258 NA Illumina HiSeq 2000 5
EGAD00001001259 NA Illumina HiSeq 2000 2
EGAD00001001260 NA Illumina HiSeq 2000 2
EGAD00001003120 We used WGS (Complete Genomics) to characterise five metastatic tumours from a BRAF mutant melanoma patient who presented intrinsic resistance. Complete Genomics 6
EGAD00001004466 Low pass WGS: 48 samples (5 blood samples from 6 patient data): 22 Tumour cores and 26 normal/benign cores (Next Seq ) NextSeq 500 48
EGAD00001004467 WES: 48 samples (5 blood samples from 6 patient data): 22 Tumour cores and 26 normal/benign cores (HiSeq) Illumina HiSeq 2500 48
EGAD00001004468 Total RNA Seq: 15 Samples (2 patients (MF1 and MF3)) (HiSeq) and Poly A RNA Seq: 27 Samples (4 patients Normal and Tumour ) (HiSeq) Illumina HiSeq 2500 42
EGAD00010000468 Uveal melanoma matched Tumour and blood samples Illumina HumanOmni2.5 24