DAC

Gencord Data Access Committee

Dac ID Contact Person Email Access Information
EGAC00001000105 Emmanouil Dermitzakis emmanouil [dot] dermitzakis [at] unige [dot] ch No additional information is available

This DAC controls 7 datasets:

Dataset ID Description Technology Samples
EGAD00000000027 eQTL data for European newborns Ilumina HumanHap550-2v3_B-Beadstudio 176
EGAD00001000425 GENCORD2 RNA-seq BAM files using BWA Illumina Genome Analyzer II,Illumina HiSeq 2000 568
EGAD00001000428 204 individuals were genotyped with the Illumina 2.5M Omni chip. Filtered genotypes were imputed into the 1000 genomes project European panel SNPs. Beagle R2 is indicated in VCF files for further filtering. See Materials and Methods in publication for details. 204
EGAD00001004790 This dataset contains the imputed genotypes for the gencord samples. Genotyping was done using Illumina OMNI2.5M. Imputation was done using SHAPEIT2/IMPUTE2 with 1000 genomes project phase 3 reference panel. 251
EGAD00001004871 ChIP-seq data for Lymphoblastoid Cell Lines (LCL) and Fibroblasts (FIB) from the Gencord Cohort: - 160 LCLs assayed for H3K27ac, H3K4me1 and H3K4me3, - 78 FIB assayed for H3K4me3 and 79 FIB assayed for H3K27ac and H3K4me1 This dataset was generated as part of the following study: Delaneau et al (2019). Chromatin 3D interactions mediate genetic effects on gene expression. Illumina HiSeq 2000 239
EGAD00001004872 RNA-seq data for 168 Lymphoblastoid Cell Lines (LCL) and 78 Fibroblasts (FIB) from the Gencord Cohort. This dataset was generated as part of the following study: Delaneau et al (2019). Chromatin 3D interactions mediate genetic effects on gene expression. Illumina HiSeq 2000 246
EGAD00010000460 GENCORD2 DNA methylation 294