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204 individuals were genotyped with the Illumina 2.5M Omni chip. Filtered genotypes were imputed into the 1000 genomes project European panel SNPs. Beagle R2 is indicated in VCF files for further filtering. See Materials and Methods in publication for details.

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Policy Statement GENCORD2

To whom it may concern,This document refers to the data set, EGAS00001000446, which has been submitted to the European Genome Archive (EGA) for the controlled access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by the Gencord Data Access Committee, composed by:Stylianos Antonarakis, University of Geneva (co-chair) Emmanouil Dermitzakis, University of Geneva (co-chair) Serge Ferrari, University of Geneva Alexandre Reymond, University of LausanneAll requests for data access should be sent to both: Stylianos Antonarakis (stylianos. Dermitzakis ( are a number of steps that a researcher must take to obtain access to this data and the process is overseen by the Gencord Data Access Committee.The submission of our dataset is in accordance with the local ethics committee approval and the laws and regulations of canton of Geneva and Switzerland, and in accordance with the informed consent and the local ethics approval of the University Hospitals of the University of Geneva.Please be advised that Maria Gutierrez-Arcelus ( is authorized to upload data to the EGA for archiving and distribution as part of your submission process, which will enable approved researchers to have encrypted access to the data. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations.Sincerely,Emmanouil DermitzakisStylianos Antonarakis

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001000446 Population Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00000194592 vcf 1.6 GB
EGAF00000194593 vcf 1.6 GB
EGAF00000194594 vcf 1.6 GB
EGAF00000194595 vcf 1.2 GB
EGAF00000194596 vcf 1.1 GB
EGAF00000194597 vcf 960.5 MB
EGAF00000194598 vcf 1.0 GB
EGAF00000194599 vcf 907.7 MB
EGAF00000194600 vcf 918.8 MB
EGAF00000194601 vcf 766.8 MB
EGAF00000194602 vcf 2.5 GB
EGAF00000194603 vcf 725.1 MB
EGAF00000194604 vcf 455.5 MB
EGAF00000194605 vcf 452.1 MB
EGAF00000194606 vcf 2.7 GB
EGAF00000194607 vcf 2.3 GB
EGAF00000194608 vcf 2.3 GB
EGAF00000194609 vcf 2.1 GB
EGAF00000194610 vcf 2.1 GB
EGAF00000194611 vcf 1.9 GB
EGAF00000194612 vcf 1.8 GB
EGAF00000194613 vcf 1.4 GB
EGAF00000194614 vcf 1.2 GB
23 Files (33.7 GB)