DAC
CUHK Liver Cancer Project DAC
| Dac ID | Contact Person | Access Information | |
|---|---|---|---|
| EGAC00001000214 | Nathalie WONG | natwong [at] cuhk [dot] edu [dot] hk | No additional information is available |
This DAC controls 8 datasets:
| Dataset ID | Description | Technology | Samples |
|---|---|---|---|
| EGAD00001004326 | This dataset includes transcriptome sequencing of 17 paired NAFLD-HCC samples and adjacent normal tissues. All the experiments were performed on Illumina HiSeq 2000 platform with raw reads stored in fastq format. | Illumina HiSeq 2000 | 34 |
| EGAD00001004475 | PacBio sequencing data of HKCI-2, HKCI-C1, HKCI-C2, HKCI-C3, HKCI-4, HKCI-9, HKCI-11, HKCI-5A and MIHA. All the data (9 samples) were saved in pacbio hdf5 format. | PacBio RS | 9 |
| EGAD00001004476 | RNA sequence data for HKCI-2, HKCI-C1, HKCI-C2, HKCI-C3 and MIHA. RNA-seq data of all the 5 samples were stored in compressed fastq format. | Illumina HiSeq 2000 | 5 |
| EGAD00001005449 | This dataset includes ChIP-seq data from two cell lines (HKCI-11 (GOFp53) and MIHA(WT p53)). All the experiments were performed on Illumina HiSeq 2000 platform with raw reads stored in fastq format. | Illumina HiSeq 2000 | 2 |
| EGAD00001005450 | This dataset contains target capture sequence data from 255 samples, including 154 tumors and 101 normal samples. All the experiments were performed on Illumina HiSeq 2000 platform with raw reads stored in fastq format. | Illumina HiSeq 2000 | 255 |
| EGAD00001005451 | This dataset contains whole genome sequence data from 24 samples, including 16 tumors and 8 normal samples. All the experiments were performed on Illumina HiSeq 2000 platform with raw reads stored in fastq format. | Illumina HiSeq 2000 | 24 |
| EGAD00001005452 | This dataset contains whole genome sequence data from 12 samples from 1 patient, including 8 tumor sectors and 4 normal samples. All the experiments were performed on Illumina HiSeq platform with raw reads stored in fastq format. | Illumina HiSeq 2000 | 12 |
| EGAD00001005453 | This dataset contains whole exome sequence data from 86 samples from 6 patient. All the experiments were performed on Illumina HiSeq platform with raw reads stored in fastq format. | Illumina HiSeq 2000 | 86 |
