DAC

CUHK Liver Cancer Project DAC

Dac ID Contact Person Email Access Information
EGAC00001000214 Nathalie WONG natwong [at] cuhk [dot] edu [dot] hk No additional information is available

This DAC controls 8 datasets:

Dataset ID Description Technology Samples
EGAD00001004326 This dataset includes transcriptome sequencing of 17 paired NAFLD-HCC samples and adjacent normal tissues. All the experiments were performed on Illumina HiSeq 2000 platform with raw reads stored in fastq format. Illumina HiSeq 2000 34
EGAD00001004475 PacBio sequencing data of HKCI-2, HKCI-C1, HKCI-C2, HKCI-C3, HKCI-4, HKCI-9, HKCI-11, HKCI-5A and MIHA. All the data (9 samples) were saved in pacbio hdf5 format. PacBio RS 9
EGAD00001004476 RNA sequence data for HKCI-2, HKCI-C1, HKCI-C2, HKCI-C3 and MIHA. RNA-seq data of all the 5 samples were stored in compressed fastq format. Illumina HiSeq 2000 5
EGAD00001005449 This dataset includes ChIP-seq data from two cell lines (HKCI-11 (GOFp53) and MIHA(WT p53)). All the experiments were performed on Illumina HiSeq 2000 platform with raw reads stored in fastq format. Illumina HiSeq 2000 2
EGAD00001005450 This dataset contains target capture sequence data from 255 samples, including 154 tumors and 101 normal samples. All the experiments were performed on Illumina HiSeq 2000 platform with raw reads stored in fastq format. Illumina HiSeq 2000 255
EGAD00001005451 This dataset contains whole genome sequence data from 24 samples, including 16 tumors and 8 normal samples. All the experiments were performed on Illumina HiSeq 2000 platform with raw reads stored in fastq format. Illumina HiSeq 2000 24
EGAD00001005452 This dataset contains whole genome sequence data from 12 samples from 1 patient, including 8 tumor sectors and 4 normal samples. All the experiments were performed on Illumina HiSeq platform with raw reads stored in fastq format. Illumina HiSeq 2000 12
EGAD00001005453 This dataset contains whole exome sequence data from 86 samples from 6 patient. All the experiments were performed on Illumina HiSeq platform with raw reads stored in fastq format. Illumina HiSeq 2000 86