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Whole exome sequence of intratumor heterogeneity study

This dataset contains whole exome sequence data from 86 samples from 6 patient. All the experiments were performed on Illumina HiSeq platform with raw reads stored in fastq format.

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Data Assess policy for CUHK liver cancer project

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom Nathalie Wong grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Nathalie Wong and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. The Chinese University of Hong Kong: Your Institution details here 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Nathalie Wong within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Nathalie Wong prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Nathalie Wong as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Nathalie Wong may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Nathalie Wong. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. Applicants should ask for Appendix I,II, III by email.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002094 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002799714 fq.gz 5.2 GB
EGAF00002799715 fq.gz 5.9 GB
EGAF00002799716 fq.gz 5.4 GB
EGAF00002799717 fq.gz 6.1 GB
EGAF00002799718 fq.gz 4.5 GB
EGAF00002799719 fq.gz 5.1 GB
EGAF00002799720 fq.gz 4.6 GB
EGAF00002799721 fq.gz 5.2 GB
EGAF00002799722 fq.gz 4.6 GB
EGAF00002799723 fq.gz 5.2 GB
EGAF00002799724 fq.gz 4.7 GB
EGAF00002799725 fq.gz 5.3 GB
EGAF00002799726 fq.gz 5.4 GB
EGAF00002799727 fq.gz 6.1 GB
EGAF00002799728 fq.gz 4.4 GB
EGAF00002799729 fq.gz 4.9 GB
EGAF00002799730 fq.gz 5.3 GB
EGAF00002799731 fq.gz 6.0 GB
EGAF00002799732 fq.gz 4.5 GB
EGAF00002799733 fq.gz 5.1 GB
EGAF00002799734 fq.gz 4.8 GB
EGAF00002799735 fq.gz 5.3 GB
EGAF00002799736 fq.gz 4.4 GB
EGAF00002799737 fq.gz 5.0 GB
EGAF00002799738 fq.gz 4.3 GB
EGAF00002799739 fq.gz 4.9 GB
EGAF00002799740 fq.gz 4.3 GB
EGAF00002799741 fq.gz 4.8 GB
EGAF00002799742 fq.gz 3.6 GB
EGAF00002799743 fq.gz 4.1 GB
EGAF00002799744 fq.gz 5.2 GB
EGAF00002799745 fq.gz 5.9 GB
EGAF00002799746 fq.gz 4.3 GB
EGAF00002799747 fq.gz 4.7 GB
EGAF00002799748 fq.gz 4.2 GB
EGAF00002799749 fq.gz 4.7 GB
EGAF00002799750 fq.gz 4.4 GB
EGAF00002799751 fq.gz 5.0 GB
EGAF00002799752 fq.gz 4.1 GB
EGAF00002799753 fq.gz 4.6 GB
EGAF00002799754 fq.gz 5.1 GB
EGAF00002799755 fq.gz 5.6 GB
EGAF00002799756 fq.gz 4.4 GB
EGAF00002799757 fq.gz 5.0 GB
EGAF00002799758 fq.gz 4.8 GB
EGAF00002799759 fq.gz 5.4 GB
EGAF00002799760 fq.gz 4.1 GB
EGAF00002799761 fq.gz 4.7 GB
EGAF00002799762 fq.gz 3.3 GB
EGAF00002799763 fq.gz 3.6 GB
EGAF00002799764 fq.gz 4.6 GB
EGAF00002799765 fq.gz 5.3 GB
EGAF00002799766 fq.gz 4.3 GB
EGAF00002799767 fq.gz 5.0 GB
EGAF00002799768 fq.gz 5.0 GB
EGAF00002799769 fq.gz 5.6 GB
EGAF00002799770 fq.gz 5.0 GB
EGAF00002799771 fq.gz 5.7 GB
EGAF00002799772 fq.gz 4.8 GB
EGAF00002799773 fq.gz 5.5 GB
EGAF00002799774 fq.gz 3.7 GB
EGAF00002799775 fq.gz 4.1 GB
EGAF00002799776 fq.gz 4.7 GB
EGAF00002799777 fq.gz 5.3 GB
EGAF00002799778 fq.gz 4.1 GB
EGAF00002799779 fq.gz 4.7 GB
EGAF00002799780 fq.gz 4.1 GB
EGAF00002799781 fq.gz 4.4 GB
EGAF00002799782 fq.gz 5.1 GB
EGAF00002799783 fq.gz 5.7 GB
EGAF00002799784 fq.gz 4.1 GB
EGAF00002799785 fq.gz 4.7 GB
EGAF00002799786 fq.gz 4.7 GB
EGAF00002799787 fq.gz 5.4 GB
EGAF00002799788 fq.gz 4.7 GB
EGAF00002799789 fq.gz 5.3 GB
EGAF00002799790 fq.gz 5.1 GB
EGAF00002799791 fq.gz 5.8 GB
EGAF00002799792 fq.gz 3.9 GB
EGAF00002799793 fq.gz 4.4 GB
EGAF00002799794 fq.gz 4.4 GB
EGAF00002799795 fq.gz 4.9 GB
EGAF00002799796 fq.gz 4.4 GB
EGAF00002799797 fq.gz 5.0 GB
EGAF00002799798 fq.gz 3.8 GB
EGAF00002799799 fq.gz 4.4 GB
EGAF00002799800 fq.gz 4.3 GB
EGAF00002799801 fq.gz 4.9 GB
EGAF00002799802 fq.gz 4.2 GB
EGAF00002799803 fq.gz 4.7 GB
EGAF00002799804 fq.gz 4.2 GB
EGAF00002799805 fq.gz 4.7 GB
EGAF00002799806 fq.gz 4.7 GB
EGAF00002799807 fq.gz 5.4 GB
EGAF00002799808 fq.gz 5.0 GB
EGAF00002799809 fq.gz 5.5 GB
EGAF00002799810 fq.gz 4.6 GB
EGAF00002799811 fq.gz 5.3 GB
EGAF00002799812 fq.gz 4.5 GB
EGAF00002799813 fq.gz 5.0 GB
EGAF00002799814 fq.gz 4.0 GB
EGAF00002799815 fq.gz 4.5 GB
EGAF00002799816 fq.gz 4.0 GB
EGAF00002799817 fq.gz 4.5 GB
EGAF00002799818 fq.gz 4.5 GB
EGAF00002799819 fq.gz 5.2 GB
EGAF00002799820 fq.gz 4.6 GB
EGAF00002799821 fq.gz 5.1 GB
EGAF00002799822 fq.gz 4.8 GB
EGAF00002799823 fq.gz 5.3 GB
EGAF00002799824 fq.gz 4.8 GB
EGAF00002799825 fq.gz 5.4 GB
EGAF00002799826 fq.gz 4.7 GB
EGAF00002799827 fq.gz 5.2 GB
EGAF00002799828 fq.gz 4.3 GB
EGAF00002799829 fq.gz 4.7 GB
EGAF00002799830 fq.gz 4.3 GB
EGAF00002799831 fq.gz 4.8 GB
EGAF00002799832 fq.gz 5.4 GB
EGAF00002799833 fq.gz 6.1 GB
EGAF00002799834 fq.gz 5.1 GB
EGAF00002799835 fq.gz 5.5 GB
EGAF00002799836 fq.gz 4.8 GB
EGAF00002799837 fq.gz 5.4 GB
EGAF00002799838 fq.gz 4.6 GB
EGAF00002799839 fq.gz 5.1 GB
EGAF00002799840 fq.gz 685.2 MB
EGAF00002799841 fq.gz 793.6 MB
EGAF00002799842 fq.gz 4.2 GB
EGAF00002799843 fq.gz 4.8 GB
EGAF00002799844 fq.gz 4.0 GB
EGAF00002799845 fq.gz 4.3 GB
EGAF00002799846 fq.gz 4.1 GB
EGAF00002799847 fq.gz 4.6 GB
EGAF00002799848 fq.gz 4.5 GB
EGAF00002799849 fq.gz 5.1 GB
EGAF00002799850 fq.gz 3.9 GB
EGAF00002799851 fq.gz 4.3 GB
EGAF00002799852 fq.gz 4.1 GB
EGAF00002799853 fq.gz 4.5 GB
EGAF00002799854 fq.gz 4.7 GB
EGAF00002799855 fq.gz 5.4 GB
EGAF00002799856 fq.gz 4.5 GB
EGAF00002799857 fq.gz 5.1 GB
EGAF00002799858 fq.gz 4.7 GB
EGAF00002799859 fq.gz 5.4 GB
EGAF00002799860 fq.gz 4.5 GB
EGAF00002799861 fq.gz 5.1 GB
EGAF00002799862 fq.gz 4.3 GB
EGAF00002799863 fq.gz 4.9 GB
EGAF00002799864 fq.gz 4.1 GB
EGAF00002799865 fq.gz 4.8 GB
EGAF00002799866 fq.gz 4.1 GB
EGAF00002799867 fq.gz 4.6 GB
EGAF00002799868 fq.gz 4.2 GB
EGAF00002799869 fq.gz 4.6 GB
EGAF00002799870 fq.gz 4.7 GB
EGAF00002799871 fq.gz 5.2 GB
EGAF00002799872 fq.gz 4.8 GB
EGAF00002799873 fq.gz 5.3 GB
EGAF00002799874 fq.gz 4.2 GB
EGAF00002799875 fq.gz 4.7 GB
EGAF00002799876 fq.gz 4.0 GB
EGAF00002799877 fq.gz 4.4 GB
EGAF00002799878 fq.gz 4.8 GB
EGAF00002799879 fq.gz 5.5 GB
EGAF00002799880 fq.gz 4.5 GB
EGAF00002799881 fq.gz 5.1 GB
EGAF00002799882 fq.gz 5.0 GB
EGAF00002799883 fq.gz 5.7 GB
EGAF00002799884 fq.gz 4.8 GB
EGAF00002799885 fq.gz 5.2 GB
EGAF00002799886 fq.gz 4.6 GB
EGAF00002799887 fq.gz 5.1 GB
174 Files (823.5 GB)