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NASH RNA-seq data

This dataset includes transcriptome sequencing of 17 paired NAFLD-HCC samples and adjacent normal tissues. All the experiments were performed on Illumina HiSeq 2000 platform with raw reads stored in fastq format.

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Data Assess policy for CUHK liver cancer project

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom Nathalie Wong grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Nathalie Wong and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. The Chinese University of Hong Kong: Your Institution details here 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Nathalie Wong within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Nathalie Wong prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Nathalie Wong as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Nathalie Wong may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Nathalie Wong. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. Applicants should ask for Appendix I,II, III by email.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001001783 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001643819 fastq.gz 5.6 GB
EGAF00001643820 fastq.gz 5.7 GB
EGAF00001643821 fastq.gz 3.9 GB
EGAF00001643822 fastq.gz 3.9 GB
EGAF00001643823 fastq.gz 4.6 GB
EGAF00001643824 fastq.gz 4.6 GB
EGAF00001643825 fastq.gz 4.6 GB
EGAF00001643826 fastq.gz 4.6 GB
EGAF00001643827 fastq.gz 5.4 GB
EGAF00001643828 fastq.gz 5.4 GB
EGAF00001643829 fastq.gz 4.6 GB
EGAF00001643830 fastq.gz 4.7 GB
EGAF00001643831 fastq.gz 5.3 GB
EGAF00001643832 fastq.gz 5.2 GB
EGAF00001643833 fastq.gz 5.8 GB
EGAF00001643834 fastq.gz 5.9 GB
EGAF00001643837 fastq.gz 5.2 GB
EGAF00001643838 fastq.gz 5.3 GB
EGAF00001643839 fastq.gz 6.1 GB
EGAF00001643840 fastq.gz 6.1 GB
EGAF00001643841 fastq.gz 5.5 GB
EGAF00001643842 fastq.gz 5.5 GB
EGAF00001643843 fastq.gz 5.5 GB
EGAF00001643844 fastq.gz 5.5 GB
EGAF00001643845 fastq.gz 5.3 GB
EGAF00001643846 fastq.gz 5.4 GB
EGAF00001643847 fastq.gz 4.2 GB
EGAF00001643848 fastq.gz 4.3 GB
EGAF00001643849 fastq.gz 4.9 GB
EGAF00001643850 fastq.gz 4.9 GB
EGAF00001643851 fastq.gz 5.5 GB
EGAF00001643852 fastq.gz 5.5 GB
EGAF00001643853 fastq.gz 6.0 GB
EGAF00001643854 fastq.gz 6.0 GB
EGAF00001643855 fastq.gz 5.3 GB
EGAF00001643856 fastq.gz 5.3 GB
EGAF00001643857 fastq.gz 4.7 GB
EGAF00001643858 fastq.gz 4.7 GB
EGAF00001643859 fastq.gz 5.1 GB
EGAF00001643860 fastq.gz 5.1 GB
EGAF00001643861 fastq.gz 4.6 GB
EGAF00001643862 fastq.gz 4.7 GB
EGAF00001643863 fastq.gz 4.3 GB
EGAF00001643864 fastq.gz 4.3 GB
EGAF00001643865 fastq.gz 4.9 GB
EGAF00001643866 fastq.gz 4.9 GB
EGAF00001643867 fastq.gz 5.8 GB
EGAF00001643868 fastq.gz 5.9 GB
EGAF00001643869 fastq.gz 6.2 GB
EGAF00001643870 fastq.gz 6.2 GB
EGAF00001643873 fastq.gz 5.2 GB
EGAF00001643874 fastq.gz 5.2 GB
EGAF00001643875 fastq.gz 4.8 GB
EGAF00001643876 fastq.gz 4.9 GB
EGAF00001643877 fastq.gz 8.8 GB
EGAF00001643878 fastq.gz 9.0 GB
EGAF00001643879 fastq.gz 4.4 GB
EGAF00001643880 fastq.gz 4.5 GB
EGAF00001643881 fastq.gz 4.7 GB
EGAF00001643882 fastq.gz 4.8 GB
EGAF00001643883 fastq.gz 5.3 GB
EGAF00001643884 fastq.gz 5.4 GB
EGAF00001643885 fastq.gz 5.6 GB
EGAF00001643886 fastq.gz 5.7 GB
EGAF00001643887 fastq.gz 5.7 GB
EGAF00001643888 fastq.gz 5.6 GB
EGAF00001643889 fastq.gz 5.5 GB
EGAF00001643890 fastq.gz 5.6 GB
68 Files (359.3 GB)