DAC

Ludwig Center for Cancer Genetics and Therapeutics at Johns Hopkins

Dac ID Contact Person Email Access Information
EGAC00001000507 Ken Kinzler kinzlke [at] jhmi [dot] edu No additional information is available

This DAC controls 10 datasets:

Dataset ID Description Technology Samples
EGAD00001002263 This is the first dataset for the Botseq sequencing project Illumina HiSeq 2000,Illumina HiSeq 2500 39
EGAD00001003323 Runs that contain data for the sensitivity and specificity experiments for BiSeqS. Illumina MiSeq 2
EGAD00001003579 Samples prepared using Safe-SeqS technology. All samples ran on an Illumina MiSeq instrument. Fastq files for read 1 and the index read present (R and I respectively). Illumina MiSeq 49
EGAD00001003931 Sequencing data from 1,005 cancer patients and 812 healthy controls. All samples prepared using Safe-SeqS technology and sequenced on an Illumina MiSeq and/or HiSeq instrument. Paired FASTQ files for correspond to read 1 and the index read present (R and I respectively). Illumina HiSeq 4000 212
EGAD00001003958 Whole exome sequencing data for 18 mucoepidermoid carcinoma samples. The samples were used for Illumina TruSeq library construction and captured using Agilent V4 exome panel. The PE fastq files are provided. Illumina HiSeq 2000 18
EGAD00001003959 Whole genome sequencing data for 25 adenoid cystic carcinoma samples. The samples were used for Illumina TruSeq library construction and were sequenced on an Illumina HiSeq 2000. The PE fastq files are provided. Illumina HiSeq 2000 25
EGAD00001004355 This dataset consists on 22 samples linked to 22 bam files from whole genome and whole exome sequencing of Esthioneuroblastomas. Illumina HiSeq 2500 22
EGAD00001004399 ctDNA and protein markers for earlier detection of pancreatic cancers Illumina HiSeq 4000 14
EGAD00001004946 Whole exome sequencing data for 18 mucoepidermoid carcinoma samples. The samples were used for Illumina TruSeq library construction and captured using Agilent V4 exome panel. The PE fastq files are provided. Illumina HiSeq 2000 18
EGAD00001004964 Whole exome sequencing data for matched normal and endometriosis samples. Samples were prepared using Agilent Sureselect capture kit, and sequenced on an Illumina HiSeq 2500. The submitted files are in BAM format. Illumina HiSeq 2500 50