DAC
UCSF Brain Tumor Bioinformatics DAC
This DAC controls 15 datasets:
| Dataset ID | Description | Technology | Samples |
|---|---|---|---|
| EGAD00001002269 | We expressed PDGFRAmut, wild-type PDGFRA and a GFP control from lentivirus, in two primary GBM patient-derived cell lines that we had cultured as monolayers. | Illumina HiSeq 4000 | 1 |
| EGAD00001002270 | We collected fresh tissue from an untreated GBM (SF10282) directly from the operating room and subjected the biopsy to single-cell RNA-seq with the fluidigm C1 machine, resulting in sequencing libraries from 96 individual cells. | Illumina HiSeq 2500 | 1 |
| EGAD00001002271 | We collected fresh tissue from an untreated GBM (SF10345) directly from the operating room and subjected the biopsy to single-cell RNA-seq with the fluidigm C1 machine, resulting in sequencing libraries from 96 individual cells. | Illumina HiSeq 2500 | 1 |
| EGAD00001002272 | We collected fresh tissue from an untreated GBM (SF10360) directly from the operating room and subjected the biopsy to single-cell RNA-seq with the fluidigm C1 machine, resulting in sequencing libraries from 96 individual cells. | Illumina HiSeq 2500 | 1 |
| EGAD00001002273 | We performed bulk exome-seq on a primary GBM and a blood sample from SF10345 | Illumina HiSeq 2500 | 1 |
| EGAD00001002274 | We performed bulk exome-seq on a primary GBM and a blood sample from SF10360 | Illumina HiSeq 2500 | 1 |
| EGAD00001002275 | We performed bulk exome-seq on a primary GBM and a blood sample from SF10282 | Illumina HiSeq 2500 | 1 |
| EGAD00001003107 | We collected fresh tissue from an untreated GBM directly from the operating room and subjected the biopsy to single-cell RNA-seq with the fluidigm C1 machine after selection of CD11b+ cells using magnetic beads. | Illumina HiSeq 2500 | 1 |
| EGAD00001003108 | We collected fresh tissue from an untreated GBM directly from the operating room and subjected the biopsy to single-cell RNA-seq with the fluidigm C1 machine after selection of CD11b+ cells using magnetic beads. | Illumina HiSeq 2500 | 1 |
| EGAD00001003109 | We collected fresh tissue from an untreated GBM directly from the operating room and subjected the biopsy to single-cell RNA-seq with the fluidigm C1 machine after selection of CD11b+ cells using magnetic beads. | Illumina HiSeq 2500 | 1 |
| EGAD00001003110 | We collected fresh tissue from an untreated GBM directly from the operating room and subjected the biopsy to single-cell RNA-seq with the fluidigm C1 machine after selection of CD11b+ cells using magnetic beads. | Illumina HiSeq 2500 | 1 |
| EGAD00001003111 | We collected fresh tissue from an untreated GBM directly from the operating room and subjected the biopsy to single-cell RNA-seq with the fluidigm C1 machine after selection of CD11b+ cells using magnetic beads. | Illumina HiSeq 2500 | 1 |
| EGAD00001003112 | We collected fresh tissue from an untreated GBM (SF10592) directly from the operating room and subjected the biopsy to single-cell RNA-seq with the fluidigm C1 machine, resulting in sequencing libraries from 96 individual cells. | Illumina HiSeq 2500 | 1 |
| EGAD00001003113 | We collected fresh tissue from an untreated GBM (SF10679) directly from the operating room and subjected the biopsy to single-cell RNA-seq with the fluidigm C1 machine, resulting in sequencing libraries from 96 individual cells. | Illumina HiSeq 2500 | 1 |
| EGAD00001003114 | We collected fresh tissue from an untreated GBM (SF10281) directly from the operating room and subjected the biopsy to single-cell RNA-seq with the fluidigm C1 machine, resulting in sequencing libraries from 96 individual cells. | Illumina HiSeq 2500 | 1 |
