DAC

Human Heredity and Health in Africa Data Access Committee

Dac ID Contact Person Email Access Information
EGAC00001000648 H3Africa DAC dbac [at] h3africa [dot] org https://www.h3abionet.org/images/Technical_guides/h3abionet_data_submission_appendix_b.docx.pdf

This DAC controls 17 datasets:

Dataset ID Description Technology Samples
EGAD00001004220 Samples from Zambia generated for the H3Africa Chip Design Study Illumina HiSeq 2500 41
EGAD00001004316 Samples from Cameroon generated for the H3Africa Chip Design Study Illumina HiSeq 2500 24
EGAD00001004334 Samples from Mali generated for the H3Africa Chip Design Study Illumina HiSeq 2500 50
EGAD00001004393 Samples from Cameroon generated for the H3Africa Chip Design Study Illumina HiSeq 2500 26
EGAD00001004448 Samples from Burkina Faso and Ghana generated for the H3Africa Chip Design Study Illumina HiSeq 2500 60
EGAD00001004505 Samples from Nigeria generated for the H3Africa Chip Design Study Illumina HiSeq 2500 49
EGAD00001004533 Samples from Botswana generated for the H3Africa Chip Design Study Illumina HiSeq 2500 48
EGAD00001004557 Samples from Benin generated for the H3Africa Chip Design Study Illumina HiSeq 2500 50
EGAD00001005076 The TrypanoGEN project was designed in two phases: this dataset is for Phase 1: Variant discovery, and includes 233 samples sequenced to approximately 10X coverage on an Illumina 2500. Illumina HiSeq 2500 233
EGAD00001005310 The phenotypic data for 348 samples of the H3Africa Chip Design Study. 348
EGAD00001006224 Whole Exome Sequencing data from a retrospective paediatric HIV-disease progression cohort defined on the World Health Organization's criteria for paediatric HIV progression. Data comprises of BAM and VCF files for 314 participants from 2 countries: Botswana and Uganda. Illumina HiSeq 2500 314
EGAD00001006244 Shotgun metagenomic sequencing data for nasopharyngeal colonization dynamics with Streptococcus pneumoniae and associated antimicrobial-resistance in a South African birth cohort. https://www.ebi.ac.uk/ena/data/view/PRJEB37312 196
EGAD00001006295 SNPS and INDELS of novel hereditary neurological disease genes in Mali. Beckman 8800,ABI 3730/3730xl 10
EGAD00001006418 These sequences were sequenced at the Broad on an Illumina HiSeqX at 30x -- PCR Free. The CRAMS and VCF are as produced by Broad. The VCFs produced were generated by the Broad using GATK. Illumina HiSeqX 100
EGAD00001006425 AWI-Gen Phase 1 Population cross-sectional study of older adults (mostly between 40 and 60 years), men and women. Six study sites in four sub-Saharan African counties. Ghana, Burkina Faso, Kenya and South Africa. ~12,500 participants, some groups are missing data for specific variables. Questionnaire data (demography, health history, family health history, behaviour and infection data); anthropometry; laboratory assays on blood and urine. 12032
EGAD00010001258 Human Cardio Metabochip from AWIGEN study on the interplay between genetic, epigenetic and environmental risk factors for obesity and related cardiometabolic diseases (CMD) in sub-Saharan Africa Illumina 973
EGAD00010001996 The samples were genotyped on the H3Africa array (~2.3M SNPs) using the Illumina FastTrack Sequencing Service2. The default Illumina pipeline was used for the genotype calling (build GRCh37/hg19). The data was converted to PLINK using the h3abionet/h3agwas/call2plink pipeline and QC done using the h3abionet/h3agwas/qc pipeline Illumina FastTrack 10776