DAC

Human Heredity and Health in Africa Data Access Committee

Dac ID Contact Person Email Access Information
EGAC00001000648 H3Africa DAC dbac [at] h3africa [dot] org https://www.h3abionet.org/images/Technical_guides/h3abionet_data_submission_appendix_b.docx.pdf

This DAC controls 14 datasets:

Dataset ID Description Technology Samples
EGAD00001004220 Samples from Zambia generated for the H3Africa Chip Design Study Illumina HiSeq 2500 41
EGAD00001004316 Samples from Cameroon generated for the H3Africa Chip Design Study Illumina HiSeq 2500 24
EGAD00001004334 Samples from Mali generated for the H3Africa Chip Design Study Illumina HiSeq 2500 50
EGAD00001004393 Samples from Cameroon generated for the H3Africa Chip Design Study Illumina HiSeq 2500 26
EGAD00001004448 Samples from Burkina Faso and Ghana generated for the H3Africa Chip Design Study Illumina HiSeq 2500 60
EGAD00001004505 Samples from Nigeria generated for the H3Africa Chip Design Study Illumina HiSeq 2500 49
EGAD00001004533 Samples from Botswana generated for the H3Africa Chip Design Study Illumina HiSeq 2500 48
EGAD00001004557 Samples from Benin generated for the H3Africa Chip Design Study Illumina HiSeq 2500 50
EGAD00001005076 The TrypanoGEN project was designed in two phases: this dataset is for Phase 1: Variant discovery, and includes 233 samples sequenced to approximately 10X coverage on an Illumina 2500. Illumina HiSeq 2500 233
EGAD00001005310 The phenotypic data for 348 samples of the H3Africa Chip Design Study. 348
EGAD00001006224 Whole Exome Sequencing data from a retrospective paediatric HIV-disease progression cohort defined on the World Health Organization's criteria for paediatric HIV progression. Data comprises of BAM and VCF files for 314 participants from 2 countries: Botswana and Uganda. Illumina HiSeq 2500 314
EGAD00001006244 Shotgun metagenomic sequencing data for nasopharyngeal colonization dynamics with Streptococcus pneumoniae and associated antimicrobial-resistance in a South African birth cohort. https://www.ebi.ac.uk/ena/data/view/PRJEB37312 196
EGAD00001006295 SNPS and INDELS of novel hereditary neurological disease genes in Mali. Beckman 8800,ABI 3730/3730xl 10
EGAD00010001258 Human Cardio Metabochip from AWIGEN study on the interplay between genetic, epigenetic and environmental risk factors for obesity and related cardiometabolic diseases (CMD) in sub-Saharan Africa Illumina 973