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Dataset

AWI-Gen Phase 1 GWAS Genotype data

Dataset ID	Technology	Samples
EGAD00010001996	N/A	10776

Dataset Description

The samples were genotyped on the H3Africa array (~2.3M SNPs) using the Illumina FastTrack Sequencing Service2. The default Illumina pipeline was used for the genotype calling (build GRCh37/hg19). The data was converted to PLINK using the h3abionet/h3agwas/call2plink pipeline and QC done using the h3abionet/h3agwas/qc pipeline

Data Use Conditions

HMB PS PUB MOR

See further information on Data Use Conditions

Label	Code	Version
health or medical or biomedical research	DUO:0000006	2019-01-07
project specific restriction	DUO:0000027	2019-01-07
publication required	DUO:0000019	2019-01-07
publication moratorium	DUO:0000024	2019-01-07

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

Human Heredity and Health in Africa Data Access Committee
Contact person: H3Africa DAC
Email: dbac [at] h3africa [dot] org
Access information: https://catalog.h3africa.org/
More details: EGAC00001000648

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This dataset is featured in 1 study

Studies are experimental investigations of a particular phenomenon. e.g. case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients. Click on one of the Study IDs below to find out more.

Study ID	Study Title	Study Type
EGAS00001002482	H3Africa - Genomic and Environmental Risk Factors for Cardiometabolic Disease in Africans	Other

EGA Beacon