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H3Africa Consortium WGS VCF

Joint called VCF for whole genome sequence data from 410 samples described in the paper: PMID:33116287. It includes 314 high coverage (average 30X) samples sequenced on the Illumina X-Ten, also available as individual datasets under the H3Africa Chip study (EGAS00001002976) and 112 medium coverage (average 10X) samples from the TrypanGen study (EGAS00001002602) sequenced on Illumina HiSeq 2500. Supplementary table 3 of the paper describes the geographic breakdown of the samples. 16 samples from the Southern African Human Genome project have been removed from this VCF.

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H3ABioNet Data Submission Policy for H3AChip

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005972 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005809795 csv 12.7 kB
EGAF00005809796 tsv 3.6 kB
EGAF00007462277 vcf 4.0 GB
EGAF00007462278 vcf 4.1 GB
EGAF00007462279 vcf 4.0 GB
EGAF00007462280 vcf 2.7 GB
EGAF00007462281 vcf 2.8 GB
EGAF00007462282 vcf 2.7 GB
EGAF00007462283 vcf 3.0 GB
EGAF00007462284 vcf 2.6 GB
EGAF00007462285 vcf 2.3 GB
EGAF00007462286 vcf 2.2 GB
EGAF00007462287 vcf 6.8 GB
EGAF00007462288 vcf 1.8 GB
EGAF00007462289 vcf 1.3 GB
EGAF00007462290 vcf 1.3 GB
EGAF00007462291 vcf 7.1 GB
EGAF00007462292 vcf 5.8 GB
EGAF00007462293 vcf 5.8 GB
EGAF00007462294 vcf 5.1 GB
EGAF00007462295 vcf 5.1 GB
EGAF00007462296 vcf 5.0 GB
EGAF00007462297 vcf 4.7 GB
EGAF00007462298 vcf 3.8 GB
24 Files (84.2 GB)