DAC
LLDEEP DAG2+ Data Access Committee
Dac ID | Contact Person | Access Information | |
---|---|---|---|
EGAC00001000694 | Jackie Dekens | j [dot] a [dot] m [dot] dekens [at] umcg [dot] nl | No additional information is available |
This DAC controls 2 datasets:
Dataset ID | Description | Technology | Samples |
---|---|---|---|
EGAD00001003459 | Single cell transcriptomics of PBMCs of 47 donors from the Lifelines Deep cohort (general population, Northern part of the Netherlands). Cells of five or six different donors were pooled together in one sample pool, resulting in eight different sample pools. In total, 28.855 cells were captured and their transcriptomes were sequenced to an average depth of 74k. Genotype data was available for each donor, which allowed us to use the Demuxlet method that uses variable SNPs between the pooled individuals to determine which cell belongs to which individual. Since genotype information is lacking of 2 individuals, the transcriptome of only 45 individuals could be retrieved. | Illumina HiSeq 4000 | 8 |
EGAD00010001315 | Single cell transcriptomics of PBMCs of 47 donors from the Lifelines Deep cohort (general population, Northern part of the Netherlands). Cells of five or six different donors were pooled together in one sample pool, resulting in eight different sample pools. In total, 28.855 cells were captured and their transcriptomes were sequenced to an average depth of 74k. Genotype data was available for each donor, which allowed us to use the Demuxlet method that uses variable SNPs between the pooled individuals to determine which cell belongs to which individual. Since genotype information is lacking of 2 individuals, the transcriptome of only 45 individuals could be retrieved. | Illumina HiSeq4000 | 45 |