DAC for Greenland Studies of University of Copenhagen and University of Southern Denmark.

Dac ID Contact Person Email Access Information
EGAC00001000736 Christina Viskum Lytken Larsen cll [at] si-folkesundhed [dot] dk No additional information is available

This DAC controls 5 datasets:

Dataset ID Description Technology Samples
EGAD00001003813 The data contain whole exome sequencing of 27 Greenlanders in nine trios. Data were produced by Agilent SureSelect capture followed by paired-end Illumina HiSeq 2000 sequencing to a depth of 90.1X. More details on processing and analysis can be found in Moltke et al, Nature 2014 (PMID 25043022). Illumina HiSeq 2000 27
EGAD00001003814 The data contain whole deep RNA sequencing of leukocytes from 17 Greenlanders. RNA was purified from peripheral blood with the PAXGene Blood miRNA Kit (Qiagen). The RNA sequencing library was prepared following the instructions of the TruSeq RNA Sample Prep Kit v2 (Illumina). For mRNA isolation and fragmentation 200 ng of total RNA was purified by oligo-dT beads. The qualified libraries were amplified on cBot to generate the cluster on the flowcell (TruSeq PE Cluster Kit V3–cBot–HS, Illumina). The amplified flow cell was sequenced paired-end on the HiSeq 4000 System (TruSeq SBS KIT-HS V3, Illumina). Illumina HiSeq 4000 17
EGAD00010001427 Cardio-Metabochip genotypes for B99 cohort Illumina 1336
EGAD00010001428 Cardio-Metabochip genotypes for IHIT cohort Illumina 2791
EGAD00010002057 This file fileset has 4607 Greenlanders scored on the Illumina MEGA array (1,622,813 sites), and has been put on the plus strand. The data is in PLINK bed/bim/fam format. The Greenlandic individuals originate from two population surveys, B99 and IHIT. Illumina MEGA array 4607