DAC

PFA study -Taylor lab DAC

Dac ID Contact Person Email Access Information
EGAC00001001526 Michael D. Taylor mdtaylor [at] sickkids [dot] ca No additional information is available

This DAC controls 2 datasets:

Dataset ID Description Technology Samples
EGAD00001006045 WGS bam file for the 18 samples used in Michealraj et al. Cell 2020. The dataset includes PFA ependymoma tissue, derived line and blood samples of 6 patients WGS data were aligned with BWA to the hg38 human reference genome (igenome) and further processed according to the GATK best practice pipeline. HiSeq X Five 18
EGAD00001006046 RNA-seq fastq files for the 16 samples used in Michealraj et al. Cell 2020. The samples include PFA and ST ependymoma tissues, normal pediatric brain as control and PFA ependymoma lines. Illumina HiSeq 2500 16