PFA ependymoma study -WGS data
WGS bam file for the 18 samples used in Michealraj et al. Cell 2020. The dataset includes PFA ependymoma tissue, derived line and blood samples of 6 patients WGS data were aligned with BWA to the hg38 human reference genome (igenome) and further processed according to the GATK best practice pipeline.
- 14/03/2020
- 18 samples
- DAC: EGAC00001001526
- Technology: HiSeq X Five
Details of the Data access policy for the PFA WGS and RNA-seq data from the Taylor lab.
For each dataset that requires access control, there is a corresponding Data Access Committee (DAC) who determine access permissions. Data access requests are reviewed by the relevant DAC, not by the EGA. If you need to request access to this data set, please contact Michael D. Taylor at mdtaylor@sickkids.ca or Craig Daniels at craig.daniels@sickkids.ca.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001004312 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF00003491711 | bam | 322.6 GB | Report |
|
| EGAF00003491712 | bam | 278.2 GB | Report |
|
| EGAF00003491713 | bam | 232.9 GB | Report |
|
| EGAF00003491714 | bam | 218.1 GB | Report |
|
| EGAF00003491715 | bam | 246.3 GB | Report |
|
| EGAF00003491716 | bam | 254.6 GB | Report |
|
| EGAF00003491717 | bam | 285.6 GB | Report |
|
| EGAF00003491718 | bam | 277.7 GB | Report |
|
| EGAF00003491719 | bam | 284.7 GB | Report |
|
| EGAF00003491720 | bam | 286.7 GB | Report |
|
| EGAF00003491721 | bam | 252.3 GB | Report |
|
| EGAF00003491722 | bam | 270.5 GB | Report |
|
| EGAF00003491723 | bam | 241.1 GB | Report |
|
| EGAF00003491724 | bam | 260.8 GB | Report |
|
| EGAF00003491725 | bam | 263.8 GB | Report |
|
| EGAF00003491726 | bam | 260.5 GB | Report |
|
| EGAF00003491727 | bam | 283.8 GB | Report |
|
| EGAF00003491728 | bam | 283.2 GB | Report |
|
| 18 Files (4.8 TB) | ||||