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PFA ependymoma cancer study

Sequencing data related the PFA ependymoma study (Michealraj et al., Cell 2020), a lethal glial malignancy of the hindbrain found in babies and toddlers.

Type: Other
Archiver: European Genome-phenome Archive (EGA)

2 Datasets 2 Publications

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD00001006045	WGS bam file for the 18 samples used in Michealraj et al. Cell 2020. The dataset includes PFA ependymoma tissue, derived line and blood samples of 6 patients WGS data were aligned with BWA to the hg38 human reference genome (igenome) and further processed according to the GATK best practice pipeline.	HiSeq X Five	18
EGAD00001006046	RNA-seq fastq files for the 16 samples used in Michealraj et al. Cell 2020. The samples include PFA and ST ependymoma tissues, normal pediatric brain as control and PFA ependymoma lines.	Illumina HiSeq 2500	16

Publications	Citations
Metabolic Regulation of the Epigenome Drives Lethal Infantile Ependymoma. Michealraj KA, Kumar SA, Kim LJY, Cavalli FMG, Przelicki D, Wojcik JB, Delaidelli A, Bajic A, Saulnier O, MacLeod G, Vellanki RN, Vladoiu MC, Guilhamon P, Ong W, Lee JJY, Jiang Y, Holgado BL, Rasnitsyn A, Malik AA, Tsai R, Richman CM, Juraschka K, Haapasalo J, Wang EY, De Antonellis P, Suzuki H, Farooq H, Balin P, Kharas K, Van Ommeren R, Sirbu O, Rastan A, Krumholtz SL, Ly M, Ahmadi M, Deblois G, Srikanthan D, Luu B, Loukides J, Wu X, Garzia L, Ramaswamy V, Kanshin E, Sánchez-Osuna M, El-Hamamy I, Coutinho FJ, Prinos P, Singh S, Donovan LK, Daniels C, Schramek D, Tyers M, Weiss S, Stein LD, Lupien M, Wouters BG, Garcia BA, Arrowsmith CH, Sorensen PH, Angers S, Jabado N, Dirks PB, Mack SC, Agnihotri S, Rich JN, Taylor MD. Cell 181: 2020 1329-1345.e24	109
Androgen activity in the male embryonic hindbrain drives lethal PFA ependymoma. Zhang J, Ong W, Rasnitsyn A, Gonzalez RD, Lopez Gutierrez R, Balin P, Saadeldin A, Wu X, Vladoiu MC, Santa-Maria Lopez V, Gonzalez-Salinas F, Yadav N, Mohanakrishnan D, Boosi Narayana Rao K, Mooli RGR, Najem H, Pacheco S, Kharas K, Richman C, Przelicki D, Wang EY, Su H, Curry RN, Yang R, Kameda-Smith MM, Livingston B, Scott D, Luo Z, Xia M, Abeysundara N, Erickson AW, Mankahla N, Hu LZ, Pan C, Suarez R, Huang N, Wu Y, Wang H, Douglas T, Pallota J, Hébert S, Ng K, Mantione K, Whetstone H, Maan H, Lakkis H, Lee J, Ramakrishnan SK, Pei Y, Tang Y, Lin FY, Aldave G, Gallo M, Friedlander RM, Notta F, Donovan LK, Chintagumpala M, Wang B, Li Y, De Carvalho DD, Zhang Z, Mao Y, Hua W, Eberhart C, Lucas CG, Venneti S, Sorensen PH, Delaidelli A, Li H, Zhou W, Kirk J, Tang DG, Jiang T, Liu H, Lathia JD, Suzuki H, Rich JN, Stein LD, Jabado N, Ramaswamy V, Lu QR, Heimberger AB, Daniels C, Michealraj KA, Kleinman CL, Taylor MD. Nature 652: 2026 763-773	1

Publications

Citations

Metabolic Regulation of the Epigenome Drives Lethal Infantile Ependymoma.
Michealraj KA, Kumar SA, Kim LJY, Cavalli FMG, Przelicki D, Wojcik JB, Delaidelli A, Bajic A, Saulnier O, MacLeod G, Vellanki RN, Vladoiu MC, Guilhamon P, Ong W, Lee JJY, Jiang Y, Holgado BL, Rasnitsyn A, Malik AA, Tsai R, Richman CM, Juraschka K, Haapasalo J, Wang EY, De Antonellis P, Suzuki H, Farooq H, Balin P, Kharas K, Van Ommeren R, Sirbu O, Rastan A, Krumholtz SL, Ly M, Ahmadi M, Deblois G, Srikanthan D, Luu B, Loukides J, Wu X, Garzia L, Ramaswamy V, Kanshin E, Sánchez-Osuna M, El-Hamamy I, Coutinho FJ, Prinos P, Singh S, Donovan LK, Daniels C, Schramek D, Tyers M, Weiss S, Stein LD, Lupien M, Wouters BG, Garcia BA, Arrowsmith CH, Sorensen PH, Angers S, Jabado N, Dirks PB, Mack SC, Agnihotri S, Rich JN, Taylor MD. Cell 181: 2020 1329-1345.e24

109

Androgen activity in the male embryonic hindbrain drives lethal PFA ependymoma.
Zhang J, Ong W, Rasnitsyn A, Gonzalez RD, Lopez Gutierrez R, Balin P, Saadeldin A, Wu X, Vladoiu MC, Santa-Maria Lopez V, Gonzalez-Salinas F, Yadav N, Mohanakrishnan D, Boosi Narayana Rao K, Mooli RGR, Najem H, Pacheco S, Kharas K, Richman C, Przelicki D, Wang EY, Su H, Curry RN, Yang R, Kameda-Smith MM, Livingston B, Scott D, Luo Z, Xia M, Abeysundara N, Erickson AW, Mankahla N, Hu LZ, Pan C, Suarez R, Huang N, Wu Y, Wang H, Douglas T, Pallota J, Hébert S, Ng K, Mantione K, Whetstone H, Maan H, Lakkis H, Lee J, Ramakrishnan SK, Pei Y, Tang Y, Lin FY, Aldave G, Gallo M, Friedlander RM, Notta F, Donovan LK, Chintagumpala M, Wang B, Li Y, De Carvalho DD, Zhang Z, Mao Y, Hua W, Eberhart C, Lucas CG, Venneti S, Sorensen PH, Delaidelli A, Li H, Zhou W, Kirk J, Tang DG, Jiang T, Liu H, Lathia JD, Suzuki H, Rich JN, Stein LD, Jabado N, Ramaswamy V, Lu QR, Heimberger AB, Daniels C, Michealraj KA, Kleinman CL, Taylor MD. Nature 652: 2026 763-773