Study
PFA ependymoma cancer study
| Study ID | Alternative Stable ID | Type |
|---|---|---|
| EGAS00001004312 | Other |
Study Description
Sequencing data related the PFA ependymoma study (Michealraj et al., Cell 2020), a lethal glial malignancy of the hindbrain found in babies and toddlers.
Study Datasets 2 datasets.
Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data
| Dataset ID | Description | Technology | Samples |
|---|---|---|---|
| EGAD00001006045 |
WGS bam file for the 18 samples used in Michealraj et al. Cell 2020.
The dataset includes PFA ependymoma tissue, derived line and blood samples of 6 patients
WGS data were aligned with BWA to the hg38 human reference genome (igenome) and further processed according to the GATK best practice pipeline.
|
HiSeq X Five | 18 |
| EGAD00001006046 |
RNA-seq fastq files for the 16 samples used in Michealraj et al. Cell 2020.
The samples include PFA and ST ependymoma tissues, normal pediatric brain as control and PFA ependymoma lines.
|
Illumina HiSeq 2500 | 16 |
Who archives the data?
