EGAD00001006238 |
In this study, a total of 300 patients with MIBC receiving chemotherapy were included; 62 received NAC before cystectomy and 245 received first-line chemotherapy upon detection of locally-advanced (T4b) or metastatic disease. Treatment response, defined as pathological downstaging (< pTa,CIS,N0) after NAC or complete or partial response after first-line treatment (RECIST criteria). RNA-seq was performed using the QuantSeq kit FWD HT kit (Lexogen) using 500 ng input RNA from 121 tumor samples. Data provided here consist of 780 fastq files for RNA-seq. |
NextSeq 500 |
121 |
EGAD00001006239 |
In this study, a total of 300 patients with MIBC receiving chemotherapy were included; 62 received NAC before cystectomy and 245 received first-line chemotherapy upon detection of locally-advanced (T4b) or metastatic disease. Treatment response, defined as pathological downstaging (< pTa,CIS,N0) after NAC or complete or partial response after first-line treatment (RECIST criteria). WES was performed using DNA from 165 tumors (76x median coverage) and associated germline DNA (46x median coverage). Data provided here consist of 5,828 fastq files for WES. |
Illumina NovaSeq 6000,NextSeq 500 |
330 |
EGAD00001006656 |
For this project about non-muscle invasive bladder cancer (NMIBC), we analysed total RNA-seq data from 535 patients. Sequencing of total RNA was performed using ScriptSeq-v2 RNA-Seq Library Preparation Kit (Illumina) and KAPA RNA HyperPrep Kit with RiboErase HMR (Roche). RNA input was 500 ng for both kits. The dataset is composed of 1,596 fastq files. |
Illumina HiSeq 2000,Illumina MiSeq,Illumina NovaSeq 6000,NextSeq 550 |
535 |
EGAD00010001921 |
EPIC array data from 72 tumor samples with muscle invasive bladder cancer. |
EPIC BeadChip (Illumina, San Diego, CA) |
72 |
EGAD00010001943 |
SNP data from 49 paired samples (tumor/germline) with muscle invasive bladder cancer. |
Illumina Infinium Human Global Screening Array GSAMD-24v2-0_20024620_a1 BeadChip |
98 |
EGAD00010002038 |
SNP data for 473 tumor samples |
Illumina Infinium Human Global Screening Array GSAMD-24v2-0_20024620_a1 BeadChip |
473 |
EGAD00010002039 |
SNP data for 473 germline samples |
Illumina Infinium OncoArray-500K |
473 |