sWGS data from 362 tumor with non muscle invasive bladder cancer and 30 blood samples (15 males and 15 females)
A better understanding of the molecular landscape of non-muscle-invasive bladder cancer (NMIBC) is essential to improve risk assessment and identify potential therapeutic targets. Here, we perform a comprehensive genomic analysis of patients diagnosed with NMIBC based on whole-exome- (n=438), shallow whole-genome- (n=362), and total RNA-sequencing (n=414). This dataset contains 876 BAM files corresponding to the full WES dataset. This dataset contains 392 BAM files corresponding to the full sWGS dataset. Tumor samples were sequenced to median coverage of 2.14x (1.24-9.01).
- 26/09/2024
- 392 samples
- DAC: EGAC00001001642
- Technology: Illumina NovaSeq 6000
- HMB DUO:0000006 (version: 2021-02-23)health or medical or biomedical researchThis data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
- RS DUO:0000012 (version: 2021-02-23)research specific restrictionsThis data use modifier indicates that use is limited to studies of a certain research type.
- IRB DUO:0000021 (version: 2021-02-23)ethics approval requiredThis data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.
DAA_Prip_et_al_sWGS
see URL
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
Study ID | Study Title | Study Type |
---|---|---|
EGAS50000000513 | Whole Genome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
ID | File Type | Size | Located in | |
---|---|---|---|---|
EGAF50000173178 | bam | 7.7 GB | ||
EGAF50000173179 | bam | 7.7 GB | ||
EGAF50000173180 | bam | 6.7 GB | ||
EGAF50000173181 | bam | 7.4 GB | ||
EGAF50000173182 | bam | 6.8 GB | ||
EGAF50000173183 | bam | 7.5 GB | ||
EGAF50000173184 | bam | 7.0 GB | ||
EGAF50000173185 | bam | 6.4 GB | ||
EGAF50000173186 | bam | 7.1 GB | ||
EGAF50000173187 | bam | 6.8 GB | ||
EGAF50000173188 | bam | 6.9 GB | ||
EGAF50000173189 | bam | 6.5 GB | ||
EGAF50000173190 | bam | 6.9 GB | ||
EGAF50000173191 | bam | 8.9 GB | ||
EGAF50000173192 | bam | 7.8 GB | ||
EGAF50000173193 | bam | 5.9 GB | ||
EGAF50000173194 | bam | 7.0 GB | ||
EGAF50000173195 | bam | 7.6 GB | ||
EGAF50000173196 | bam | 8.2 GB | ||
EGAF50000173197 | bam | 6.8 GB | ||
EGAF50000173198 | bam | 6.5 GB | ||
EGAF50000173199 | bam | 6.9 GB | ||
EGAF50000173200 | bam | 7.0 GB | ||
EGAF50000173201 | bam | 7.2 GB | ||
EGAF50000173202 | bam | 6.2 GB | ||
EGAF50000173203 | bam | 7.4 GB | ||
EGAF50000173204 | bam | 7.0 GB | ||
EGAF50000173205 | bam | 7.6 GB | ||
EGAF50000173206 | bam | 7.2 GB | ||
EGAF50000173207 | bam | 7.6 GB | ||
EGAF50000173208 | bam | 7.6 GB | ||
EGAF50000173209 | bam | 8.0 GB | ||
EGAF50000173210 | bam | 6.9 GB | ||
EGAF50000173211 | bam | 8.3 GB | ||
EGAF50000173212 | bam | 7.5 GB | ||
EGAF50000173213 | bam | 7.5 GB | ||
EGAF50000173214 | bam | 8.7 GB | ||
EGAF50000173215 | bam | 7.8 GB | ||
EGAF50000173216 | bam | 7.5 GB | ||
EGAF50000173217 | bam | 7.9 GB | ||
EGAF50000173218 | bam | 6.8 GB | ||
EGAF50000173219 | bam | 8.6 GB | ||
EGAF50000173220 | bam | 6.7 GB | ||
EGAF50000173221 | bam | 8.8 GB | ||
EGAF50000173222 | bam | 7.6 GB | ||
EGAF50000173223 | bam | 7.5 GB | ||
EGAF50000173224 | bam | 7.8 GB | ||
EGAF50000173225 | bam | 8.0 GB | ||
EGAF50000173226 | bam | 6.7 GB | ||
EGAF50000173227 | bam | 7.3 GB | ||
EGAF50000173228 | bam | 7.0 GB | ||
EGAF50000173229 | bam | 8.0 GB | ||
EGAF50000173230 | bam | 8.3 GB | ||
EGAF50000173231 | bam | 8.6 GB | ||
EGAF50000173232 | bam | 7.1 GB | ||
EGAF50000173233 | bam | 6.0 GB | ||
EGAF50000173234 | bam | 7.1 GB | ||
EGAF50000173235 | bam | 6.9 GB | ||
EGAF50000173236 | bam | 8.1 GB | ||
EGAF50000173237 | bam | 9.0 GB | ||
EGAF50000173238 | bam | 7.2 GB | ||
EGAF50000173239 | bam | 7.0 GB | ||
EGAF50000173240 | bam | 8.0 GB | ||
EGAF50000173241 | bam | 7.1 GB | ||
EGAF50000173242 | bam | 7.2 GB | ||
EGAF50000173243 | bam | 7.4 GB | ||
EGAF50000173244 | bam | 7.3 GB | ||
EGAF50000173245 | bam | 7.6 GB | ||
EGAF50000173246 | bam | 7.1 GB | ||
EGAF50000173247 | bam | 7.7 GB | ||
EGAF50000173248 | bam | 6.3 GB | ||
EGAF50000173249 | bam | 8.0 GB | ||
EGAF50000173250 | bam | 7.1 GB | ||
EGAF50000173251 | bam | 7.5 GB | ||
EGAF50000173252 | bam | 7.4 GB | ||
EGAF50000173253 | bam | 7.3 GB | ||
EGAF50000173254 | bam | 7.2 GB | ||
EGAF50000173255 | bam | 6.5 GB | ||
EGAF50000173256 | bam | 7.2 GB | ||
EGAF50000173257 | bam | 7.0 GB | ||
EGAF50000173258 | bam | 7.6 GB | ||
EGAF50000173259 | bam | 8.0 GB | ||
EGAF50000173260 | bam | 6.3 GB | ||
EGAF50000173261 | bam | 7.2 GB | ||
EGAF50000173262 | bam | 7.2 GB | ||
EGAF50000173263 | bam | 8.3 GB | ||
EGAF50000173264 | bam | 12.2 GB | ||
EGAF50000173265 | bam | 6.8 GB | ||
EGAF50000173266 | bam | 7.5 GB | ||
EGAF50000173267 | bam | 7.1 GB | ||
EGAF50000173268 | bam | 8.9 GB | ||
EGAF50000173269 | bam | 7.7 GB | ||
EGAF50000173270 | bam | 7.9 GB | ||
EGAF50000173271 | bam | 8.2 GB | ||
EGAF50000173272 | bam | 7.9 GB | ||
EGAF50000173273 | bam | 7.2 GB | ||
EGAF50000173274 | bam | 6.6 GB | ||
EGAF50000173275 | bam | 6.9 GB | ||
EGAF50000173276 | bam | 7.2 GB | ||
EGAF50000173277 | bam | 7.3 GB | ||
EGAF50000173278 | bam | 9.1 GB | ||
EGAF50000173279 | bam | 6.7 GB | ||
EGAF50000173280 | bam | 6.1 GB | ||
EGAF50000173281 | bam | 6.9 GB | ||
EGAF50000173282 | bam | 6.9 GB | ||
EGAF50000173283 | bam | 6.3 GB | ||
EGAF50000173284 | bam | 6.2 GB | ||
EGAF50000173285 | bam | 8.1 GB | ||
EGAF50000173286 | bam | 6.7 GB | ||
EGAF50000173287 | bam | 6.7 GB | ||
EGAF50000173288 | bam | 7.0 GB | ||
EGAF50000173289 | bam | 6.3 GB | ||
EGAF50000173290 | bam | 13.4 GB | ||
EGAF50000173291 | bam | 9.5 GB | ||
EGAF50000173292 | bam | 10.6 GB | ||
EGAF50000173293 | bam | 5.6 GB | ||
EGAF50000173294 | bam | 6.3 GB | ||
EGAF50000173295 | bam | 5.9 GB | ||
EGAF50000173296 | bam | 7.1 GB | ||
EGAF50000173297 | bam | 6.7 GB | ||
EGAF50000173298 | bam | 6.0 GB | ||
EGAF50000173299 | bam | 6.4 GB | ||
EGAF50000173300 | bam | 5.9 GB | ||
EGAF50000173301 | bam | 6.7 GB | ||
EGAF50000173302 | bam | 6.2 GB | ||
EGAF50000173303 | bam | 7.5 GB | ||
EGAF50000173304 | bam | 11.8 GB | ||
EGAF50000173305 | bam | 10.4 GB | ||
EGAF50000173306 | bam | 7.5 GB | ||
EGAF50000173307 | bam | 7.4 GB | ||
EGAF50000173308 | bam | 7.0 GB | ||
EGAF50000173309 | bam | 7.9 GB | ||
EGAF50000173310 | bam | 7.0 GB | ||
EGAF50000173311 | bam | 8.8 GB | ||
EGAF50000173312 | bam | 8.4 GB | ||
EGAF50000173313 | bam | 10.2 GB | ||
EGAF50000173314 | bam | 6.7 GB | ||
EGAF50000173315 | bam | 6.9 GB | ||
EGAF50000173316 | bam | 6.3 GB | ||
EGAF50000173317 | bam | 7.8 GB | ||
EGAF50000173318 | bam | 8.7 GB | ||
EGAF50000173319 | bam | 7.5 GB | ||
EGAF50000173320 | bam | 7.0 GB | ||
EGAF50000173321 | bam | 8.0 GB | ||
EGAF50000173322 | bam | 7.0 GB | ||
EGAF50000173323 | bam | 7.9 GB | ||
EGAF50000173324 | bam | 7.7 GB | ||
EGAF50000173325 | bam | 6.8 GB | ||
EGAF50000173326 | bam | 7.0 GB | ||
EGAF50000173327 | bam | 7.8 GB | ||
EGAF50000173328 | bam | 6.3 GB | ||
EGAF50000173329 | bam | 6.8 GB | ||
EGAF50000173330 | bam | 6.2 GB | ||
EGAF50000173331 | bam | 9.8 GB | ||
EGAF50000173332 | bam | 9.3 GB | ||
EGAF50000173333 | bam | 7.4 GB | ||
EGAF50000173334 | bam | 8.8 GB | ||
EGAF50000173335 | bam | 7.1 GB | ||
EGAF50000173336 | bam | 6.6 GB | ||
EGAF50000173337 | bam | 5.4 GB | ||
EGAF50000173338 | bam | 6.3 GB | ||
EGAF50000173339 | bam | 6.2 GB | ||
EGAF50000173340 | bam | 7.7 GB | ||
EGAF50000173341 | bam | 7.7 GB | ||
EGAF50000173342 | bam | 7.2 GB | ||
EGAF50000173343 | bam | 8.2 GB | ||
EGAF50000173344 | bam | 7.0 GB | ||
EGAF50000173345 | bam | 6.8 GB | ||
EGAF50000173346 | bam | 7.1 GB | ||
EGAF50000173347 | bam | 7.1 GB | ||
EGAF50000173348 | bam | 7.1 GB | ||
EGAF50000173349 | bam | 7.1 GB | ||
EGAF50000173350 | bam | 11.5 GB | ||
EGAF50000173351 | bam | 11.1 GB | ||
EGAF50000173352 | bam | 6.4 GB | ||
EGAF50000173353 | bam | 7.7 GB | ||
EGAF50000173354 | bam | 7.0 GB | ||
EGAF50000173355 | bam | 1.5 GB | ||
EGAF50000173356 | bam | 9.3 GB | ||
EGAF50000173357 | bam | 6.3 GB | ||
EGAF50000173358 | bam | 13.4 GB | ||
EGAF50000173359 | bam | 6.6 GB | ||
EGAF50000173360 | bam | 13.3 GB | ||
EGAF50000173361 | bam | 4.5 GB | ||
EGAF50000173362 | bam | 6.6 GB | ||
EGAF50000173363 | bam | 2.7 GB | ||
EGAF50000173364 | bam | 7.0 GB | ||
EGAF50000173365 | bam | 12.2 GB | ||
EGAF50000173366 | bam | 7.8 GB | ||
EGAF50000173367 | bam | 13.3 GB | ||
EGAF50000173368 | bam | 25.1 GB | ||
EGAF50000173369 | bam | 6.4 GB | ||
EGAF50000173370 | bam | 6.2 GB | ||
EGAF50000173371 | bam | 4.5 GB | ||
EGAF50000173372 | bam | 6.9 GB | ||
EGAF50000173373 | bam | 7.4 GB | ||
EGAF50000173374 | bam | 8.1 GB | ||
EGAF50000173375 | bam | 7.6 GB | ||
EGAF50000173376 | bam | 8.6 GB | ||
EGAF50000173377 | bam | 7.7 GB | ||
EGAF50000173378 | bam | 6.8 GB | ||
EGAF50000173379 | bam | 7.3 GB | ||
EGAF50000173380 | bam | 6.6 GB | ||
EGAF50000173381 | bam | 9.0 GB | ||
EGAF50000173382 | bam | 8.8 GB | ||
EGAF50000173383 | bam | 9.4 GB | ||
EGAF50000173384 | bam | 6.6 GB | ||
EGAF50000173385 | bam | 7.6 GB | ||
EGAF50000173386 | bam | 7.1 GB | ||
EGAF50000173387 | bam | 6.4 GB | ||
EGAF50000173388 | bam | 7.9 GB | ||
EGAF50000173389 | bam | 8.0 GB | ||
EGAF50000173390 | bam | 7.0 GB | ||
EGAF50000173391 | bam | 10.2 GB | ||
EGAF50000173392 | bam | 7.6 GB | ||
EGAF50000173393 | bam | 8.3 GB | ||
EGAF50000173394 | bam | 8.2 GB | ||
EGAF50000173395 | bam | 10.9 GB | ||
EGAF50000173396 | bam | 7.5 GB | ||
EGAF50000173397 | bam | 10.8 GB | ||
EGAF50000173398 | bam | 7.8 GB | ||
EGAF50000173399 | bam | 7.7 GB | ||
EGAF50000173400 | bam | 7.4 GB | ||
EGAF50000173401 | bam | 6.5 GB | ||
EGAF50000173402 | bam | 6.9 GB | ||
EGAF50000173403 | bam | 2.1 GB | ||
EGAF50000173404 | bam | 6.8 GB | ||
EGAF50000173405 | bam | 6.9 GB | ||
EGAF50000173406 | bam | 6.2 GB | ||
EGAF50000173407 | bam | 7.4 GB | ||
EGAF50000173408 | bam | 7.3 GB | ||
EGAF50000173409 | bam | 7.8 GB | ||
EGAF50000173410 | bam | 7.4 GB | ||
EGAF50000173411 | bam | 6.9 GB | ||
EGAF50000173412 | bam | 6.8 GB | ||
EGAF50000173413 | bam | 7.1 GB | ||
EGAF50000173414 | bam | 6.6 GB | ||
EGAF50000173415 | bam | 8.2 GB | ||
EGAF50000173416 | bam | 7.4 GB | ||
EGAF50000173417 | bam | 6.9 GB | ||
EGAF50000173418 | bam | 7.4 GB | ||
EGAF50000173419 | bam | 7.0 GB | ||
EGAF50000173420 | bam | 6.5 GB | ||
EGAF50000173421 | bam | 6.4 GB | ||
EGAF50000173422 | bam | 9.0 GB | ||
EGAF50000173423 | bam | 7.8 GB | ||
EGAF50000173424 | bam | 8.7 GB | ||
EGAF50000173425 | bam | 7.9 GB | ||
EGAF50000173426 | bam | 7.6 GB | ||
EGAF50000173427 | bam | 7.3 GB | ||
EGAF50000173428 | bam | 7.1 GB | ||
EGAF50000173429 | bam | 7.0 GB | ||
EGAF50000173430 | bam | 7.3 GB | ||
EGAF50000173431 | bam | 8.1 GB | ||
EGAF50000173432 | bam | 8.3 GB | ||
EGAF50000173433 | bam | 7.8 GB | ||
EGAF50000173434 | bam | 7.7 GB | ||
EGAF50000173435 | bam | 8.2 GB | ||
EGAF50000173436 | bam | 7.4 GB | ||
EGAF50000173437 | bam | 7.6 GB | ||
EGAF50000173438 | bam | 6.8 GB | ||
EGAF50000173439 | bam | 7.8 GB | ||
EGAF50000173440 | bam | 7.8 GB | ||
EGAF50000173441 | bam | 6.8 GB | ||
EGAF50000173442 | bam | 7.2 GB | ||
EGAF50000173443 | bam | 7.7 GB | ||
EGAF50000173444 | bam | 7.7 GB | ||
EGAF50000173445 | bam | 8.9 GB | ||
EGAF50000173446 | bam | 7.1 GB | ||
EGAF50000173447 | bam | 8.2 GB | ||
EGAF50000173448 | bam | 8.0 GB | ||
EGAF50000173449 | bam | 7.7 GB | ||
EGAF50000173450 | bam | 7.2 GB | ||
EGAF50000173451 | bam | 7.5 GB | ||
EGAF50000173452 | bam | 8.1 GB | ||
EGAF50000173453 | bam | 7.7 GB | ||
EGAF50000173454 | bam | 7.8 GB | ||
EGAF50000173455 | bam | 7.5 GB | ||
EGAF50000173456 | bam | 7.5 GB | ||
EGAF50000173457 | bam | 7.4 GB | ||
EGAF50000173458 | bam | 7.3 GB | ||
EGAF50000173459 | bam | 8.4 GB | ||
EGAF50000173460 | bam | 7.9 GB | ||
EGAF50000173461 | bam | 7.1 GB | ||
EGAF50000173462 | bam | 7.0 GB | ||
EGAF50000173463 | bam | 7.2 GB | ||
EGAF50000173464 | bam | 7.3 GB | ||
EGAF50000173465 | bam | 7.0 GB | ||
EGAF50000173466 | bam | 6.4 GB | ||
EGAF50000173467 | bam | 6.2 GB | ||
EGAF50000173468 | bam | 7.5 GB | ||
EGAF50000173469 | bam | 11.3 GB | ||
EGAF50000173470 | bam | 6.4 GB | ||
EGAF50000173471 | bam | 7.2 GB | ||
EGAF50000173472 | bam | 7.0 GB | ||
EGAF50000173473 | bam | 2.4 GB | ||
EGAF50000173474 | bam | 7.3 GB | ||
EGAF50000173475 | bam | 4.0 GB | ||
EGAF50000173476 | bam | 7.0 GB | ||
EGAF50000173477 | bam | 8.9 GB | ||
EGAF50000173478 | bam | 20.6 GB | ||
EGAF50000173479 | bam | 6.9 GB | ||
EGAF50000173480 | bam | 6.9 GB | ||
EGAF50000173481 | bam | 7.4 GB | ||
EGAF50000173482 | bam | 7.0 GB | ||
EGAF50000173483 | bam | 7.9 GB | ||
EGAF50000173484 | bam | 7.7 GB | ||
EGAF50000173485 | bam | 6.4 GB | ||
EGAF50000173486 | bam | 7.2 GB | ||
EGAF50000173487 | bam | 6.9 GB | ||
EGAF50000173488 | bam | 7.3 GB | ||
EGAF50000173489 | bam | 7.4 GB | ||
EGAF50000173490 | bam | 7.9 GB | ||
EGAF50000173491 | bam | 7.9 GB | ||
EGAF50000173492 | bam | 7.8 GB | ||
EGAF50000173493 | bam | 6.7 GB | ||
EGAF50000173494 | bam | 7.6 GB | ||
EGAF50000173495 | bam | 7.2 GB | ||
EGAF50000173496 | bam | 7.0 GB | ||
EGAF50000173497 | bam | 6.9 GB | ||
EGAF50000173498 | bam | 7.2 GB | ||
EGAF50000173499 | bam | 7.0 GB | ||
EGAF50000173500 | bam | 7.4 GB | ||
EGAF50000173501 | bam | 6.7 GB | ||
EGAF50000173502 | bam | 6.8 GB | ||
EGAF50000173503 | bam | 6.8 GB | ||
EGAF50000173504 | bam | 6.4 GB | ||
EGAF50000173505 | bam | 8.0 GB | ||
EGAF50000173506 | bam | 6.3 GB | ||
EGAF50000173507 | bam | 6.6 GB | ||
EGAF50000173508 | bam | 6.7 GB | ||
EGAF50000173509 | bam | 6.5 GB | ||
EGAF50000173510 | bam | 5.6 GB | ||
EGAF50000173511 | bam | 6.8 GB | ||
EGAF50000173512 | bam | 6.9 GB | ||
EGAF50000173513 | bam | 6.6 GB | ||
EGAF50000173514 | bam | 8.1 GB | ||
EGAF50000173515 | bam | 6.9 GB | ||
EGAF50000173516 | bam | 6.5 GB | ||
EGAF50000173517 | bam | 6.4 GB | ||
EGAF50000173518 | bam | 6.8 GB | ||
EGAF50000173519 | bam | 6.2 GB | ||
EGAF50000173520 | bam | 7.7 GB | ||
EGAF50000173521 | bam | 6.5 GB | ||
EGAF50000173522 | bam | 5.4 GB | ||
EGAF50000173523 | bam | 7.2 GB | ||
EGAF50000173524 | bam | 6.8 GB | ||
EGAF50000173525 | bam | 7.2 GB | ||
EGAF50000173526 | bam | 7.2 GB | ||
EGAF50000173527 | bam | 6.7 GB | ||
EGAF50000173528 | bam | 7.4 GB | ||
EGAF50000173529 | bam | 9.2 GB | ||
EGAF50000173530 | bam | 8.2 GB | ||
EGAF50000173531 | bam | 8.0 GB | ||
EGAF50000173532 | bam | 7.5 GB | ||
EGAF50000173533 | bam | 7.7 GB | ||
EGAF50000173534 | bam | 7.0 GB | ||
EGAF50000173535 | bam | 6.9 GB | ||
EGAF50000173536 | bam | 7.4 GB | ||
EGAF50000173537 | bam | 8.2 GB | ||
EGAF50000173538 | bam | 6.8 GB | ||
EGAF50000173539 | bam | 7.5 GB | ||
EGAF50000173540 | bam | 6.6 GB | ||
EGAF50000173541 | bam | 7.1 GB | ||
EGAF50000173542 | bam | 8.0 GB | ||
EGAF50000173543 | bam | 7.9 GB | ||
EGAF50000173544 | bam | 7.3 GB | ||
EGAF50000173545 | bam | 6.3 GB | ||
EGAF50000173546 | bam | 7.0 GB | ||
EGAF50000173547 | bam | 6.5 GB | ||
EGAF50000173548 | bam | 5.9 GB | ||
EGAF50000173549 | bam | 7.1 GB | ||
EGAF50000173550 | bam | 7.9 GB | ||
EGAF50000173551 | bam | 7.9 GB | ||
EGAF50000173552 | bam | 7.5 GB | ||
EGAF50000173553 | bam | 6.4 GB | ||
EGAF50000173554 | bam | 7.0 GB | ||
EGAF50000173555 | bam | 7.0 GB | ||
EGAF50000173556 | bam | 7.5 GB | ||
EGAF50000173557 | bam | 7.1 GB | ||
EGAF50000173558 | bam | 7.1 GB | ||
EGAF50000173559 | bam | 8.5 GB | ||
EGAF50000173560 | bam | 8.2 GB | ||
EGAF50000173561 | bam | 6.3 GB | ||
EGAF50000173562 | bam | 7.9 GB | ||
EGAF50000173563 | bam | 6.9 GB | ||
EGAF50000173564 | bam | 6.7 GB | ||
EGAF50000173565 | bam | 7.5 GB | ||
EGAF50000173566 | bam | 6.4 GB | ||
EGAF50000173567 | bam | 7.4 GB | ||
EGAF50000173568 | bam | 8.0 GB | ||
EGAF50000173569 | bam | 7.7 GB | ||
392 Files (2.9 TB) |