DAC

Gene expression and Cancer

Dac ID Contact Person Email Access Information
EGAC00001001772 Joan Seoane jseoane [at] vhio [dot] net No additional information is available

This DAC controls 3 datasets:

Dataset ID Description Technology Samples
EGAD00001006451 A total of 9 brain metastasis were sequenced. For 6/9 a matched cerebrospinal fluid sample, prior to surgery and in two cases after surgery (+1 month from surgery) and after treatment (+3 month) were collected. Single-cell T cell receptor clonotypes were produced using the Chromium Single Cell 5’ Library and sequenced on an Illumina NovaSeq 6000. Illumina NovaSeq 6000 17
EGAD00001006452 A total of 9 brain metastasis were sequenced. For 6/9 a matched cerebrospinal fluid sample, prior to surgery and in two cases after surgery (+1 month from surgery) and after treatment (+3 month) were collected. Single-cell gene expression was produced using the Chromium Single Cell 5’ Library and sequenced on an Illumina NovaSeq 6000. Illumina NovaSeq 6000 19
EGAD00001006453 Whole exome sequencing of matched tumor (brain metastasis) -normal (blood) from 6 patients. Illumina HiSeq 2500 12