About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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scTCR-seq from brain metastasis micorenvironment and cerebrospinal fluid

A total of 9 brain metastasis were sequenced. For 6/9 a matched cerebrospinal fluid sample, prior to surgery and in two cases after surgery (+1 month from surgery) and after treatment (+3 month) were collected. Single-cell T cell receptor clonotypes were produced using the Chromium Single Cell 5’ Library and sequenced on an Illumina NovaSeq 6000.

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The Data in this study shall be used for the advancement of medical and biomedical research.

1. You agree to use the Data only for the advancement of medical and biomedical research, according to the consent obtained from sample donors. 2. You agree not to use the data from this study for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to attempt to link the data provided under this agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevant access committees. 5. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or program management. 6. You agree to use the data for the approved purpose and project described in your application. 7. You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 8. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives. 9. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 10. You recognise that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User Institution has the right to develop intellectual property based on comparisons with their own data. 11. You accept that this agreement will terminate immediately upon any breach of this agreement by You and You will be required to destroy any Data held. 12. You accept that it may be necessary to alter the terms of this agreement from time to time in order to address new concerns. In this event, your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004751 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00004724465 fastq.gz 328.5 MB Report
EGAF00004724466 fastq.gz 850.2 MB Report
EGAF00004724467 fastq.gz 338.8 MB Report
EGAF00004724468 fastq.gz 886.4 MB Report
EGAF00004724469 fastq.gz 418.7 MB Report
EGAF00004724470 fastq.gz 950.2 MB Report
EGAF00004724471 fastq.gz 412.4 MB Report
EGAF00004724472 fastq.gz 941.0 MB Report
EGAF00004724473 fastq.gz 415.7 MB Report
EGAF00004724474 fastq.gz 940.5 MB Report
EGAF00004724475 fastq.gz 411.6 MB Report
EGAF00004724476 fastq.gz 934.6 MB Report
EGAF00004724477 fastq.gz 310.3 MB Report
EGAF00004724478 fastq.gz 670.2 MB Report
EGAF00004724479 fastq.gz 313.0 MB Report
EGAF00004724480 fastq.gz 673.0 MB Report
EGAF00004724481 fastq.gz 136.8 MB Report
EGAF00004724482 fastq.gz 147.0 MB Report
EGAF00004724483 fastq.gz 136.8 MB Report
EGAF00004724484 fastq.gz 147.0 MB Report
EGAF00004724485 fastq.gz 34.6 MB Report
EGAF00004724486 fastq.gz 41.5 MB Report
EGAF00004724487 fastq.gz 154.5 MB Report
EGAF00004724488 fastq.gz 164.2 MB Report
EGAF00004724489 fastq.gz 198.5 MB Report
EGAF00004724490 fastq.gz 488.8 MB Report
EGAF00004724491 fastq.gz 205.9 MB Report
EGAF00004724492 fastq.gz 508.2 MB Report
EGAF00004724493 fastq.gz 134.8 MB Report
EGAF00004724494 fastq.gz 334.2 MB Report
EGAF00004724495 fastq.gz 129.8 MB Report
EGAF00004724496 fastq.gz 321.7 MB Report
EGAF00004724497 fastq.gz 14.7 MB Report
EGAF00004724498 fastq.gz 16.7 MB Report
EGAF00004724499 fastq.gz 43.0 MB Report
EGAF00004724500 fastq.gz 51.2 MB Report
EGAF00004724501 fastq.gz 112.4 MB Report
EGAF00004724502 fastq.gz 118.5 MB Report
EGAF00004724503 fastq.gz 217.8 MB Report
EGAF00004724504 fastq.gz 486.8 MB Report
EGAF00004724505 fastq.gz 226.1 MB Report
EGAF00004724506 fastq.gz 505.1 MB Report
EGAF00004724507 fastq.gz 136.3 MB Report
EGAF00004724508 fastq.gz 315.2 MB Report
EGAF00004724509 fastq.gz 135.5 MB Report
EGAF00004724510 fastq.gz 314.5 MB Report
EGAF00004724511 fastq.gz 21.1 MB Report
EGAF00004724512 fastq.gz 53.5 MB Report
EGAF00004724513 fastq.gz 21.3 MB Report
EGAF00004724514 fastq.gz 53.9 MB Report
EGAF00004724515 fastq.gz 184.3 MB Report
EGAF00004724516 fastq.gz 408.2 MB Report
EGAF00004724517 fastq.gz 184.9 MB Report
EGAF00004724518 fastq.gz 408.8 MB Report
54 Files (17.1 GB)