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scRNA-seq from brain metastasis micorenvironment and cerebrospinal fluid

A total of 9 brain metastasis were sequenced. For 6/9 a matched cerebrospinal fluid sample, prior to surgery and in two cases after surgery (+1 month from surgery) and after treatment (+3 month) were collected. Single-cell gene expression was produced using the Chromium Single Cell 5’ Library and sequenced on an Illumina NovaSeq 6000.

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The Data in this study shall be used for the advancement of medical and biomedical research.

1. You agree to use the Data only for the advancement of medical and biomedical research, according to the consent obtained from sample donors. 2. You agree not to use the data from this study for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to attempt to link the data provided under this agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevant access committees. 5. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or program management. 6. You agree to use the data for the approved purpose and project described in your application. 7. You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 8. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives. 9. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 10. You recognise that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User Institution has the right to develop intellectual property based on comparisons with their own data. 11. You accept that this agreement will terminate immediately upon any breach of this agreement by You and You will be required to destroy any Data held. 12. You accept that it may be necessary to alter the terms of this agreement from time to time in order to address new concerns. In this event, your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004751 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004724405 fastq.gz 289.7 MB
EGAF00004724406 fastq.gz 547.6 MB
EGAF00004724407 fastq.gz 286.0 MB
EGAF00004724408 fastq.gz 540.1 MB
EGAF00004724409 fastq.gz 372.7 MB
EGAF00004724410 fastq.gz 794.9 MB
EGAF00004724411 fastq.gz 383.5 MB
EGAF00004724412 fastq.gz 820.6 MB
EGAF00004724413 fastq.gz 1.1 GB
EGAF00004724414 fastq.gz 2.6 GB
EGAF00004724415 fastq.gz 1.1 GB
EGAF00004724416 fastq.gz 2.5 GB
EGAF00004724417 fastq.gz 2.3 GB
EGAF00004724418 fastq.gz 4.8 GB
EGAF00004724419 fastq.gz 2.3 GB
EGAF00004724420 fastq.gz 4.8 GB
EGAF00004724421 fastq.gz 2.1 GB
EGAF00004724422 fastq.gz 4.5 GB
EGAF00004724423 fastq.gz 2.1 GB
EGAF00004724424 fastq.gz 4.6 GB
EGAF00004724425 fastq.gz 3.1 GB
EGAF00004724426 fastq.gz 3.9 GB
EGAF00004724427 fastq.gz 8.1 GB
EGAF00004724428 fastq.gz 10.1 GB
EGAF00004724429 fastq.gz 1.7 GB
EGAF00004724430 fastq.gz 2.1 GB
EGAF00004724431 fastq.gz 3.4 GB
EGAF00004724432 fastq.gz 4.2 GB
EGAF00004724433 fastq.gz 1.9 GB
EGAF00004724434 fastq.gz 3.8 GB
EGAF00004724435 fastq.gz 1.8 GB
EGAF00004724436 fastq.gz 3.8 GB
EGAF00004724437 fastq.gz 1.5 GB
EGAF00004724438 fastq.gz 3.2 GB
EGAF00004724439 fastq.gz 1.5 GB
EGAF00004724440 fastq.gz 3.1 GB
EGAF00004724441 fastq.gz 1.2 GB
EGAF00004724442 fastq.gz 1.5 GB
EGAF00004724443 fastq.gz 1.7 GB
EGAF00004724444 fastq.gz 2.2 GB
EGAF00004724445 fastq.gz 1.5 GB
EGAF00004724446 fastq.gz 2.0 GB
EGAF00004724447 fastq.gz 4.3 GB
EGAF00004724448 fastq.gz 5.3 GB
EGAF00004724449 fastq.gz 2.1 GB
EGAF00004724450 fastq.gz 4.7 GB
EGAF00004724451 fastq.gz 2.1 GB
EGAF00004724452 fastq.gz 4.6 GB
EGAF00004724453 fastq.gz 1.7 GB
EGAF00004724454 fastq.gz 4.1 GB
EGAF00004724455 fastq.gz 1.7 GB
EGAF00004724456 fastq.gz 4.1 GB
EGAF00004724457 fastq.gz 755.0 MB
EGAF00004724458 fastq.gz 1.5 GB
EGAF00004724459 fastq.gz 786.6 MB
EGAF00004724460 fastq.gz 1.6 GB
EGAF00004724461 fastq.gz 528.0 MB
EGAF00004724462 fastq.gz 1.1 GB
EGAF00004724463 fastq.gz 546.7 MB
EGAF00004724464 fastq.gz 1.2 GB
60 Files (148.9 GB)