Somatic pathogenic variants in the normal mammary gland of sporadic breast cancer patients.

arkadiusz piotrowski
arkadiusz.piotrowski@gumed.edu.pl

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Dataset ID	Description	Technology	Samples
EGAD00001008327	This dataset contains .fastq files generated by targeted DNA sequencing of 542 cancer-associated and cadidate genes (52 individuals), and targeted duplex sequencing of PIK3CA and TP53 genes (4 individuals).	HiSeq X Ten NextSeq 550	156
EGAD00010002250	Genotyping array data for normal mammary gland control samples	Illumina	50
EGAD00010002251	Genotyping array data for breast cancer and matched normal mammary gland samples	Illumina	100
EGAD50000000769	Investigation of post-zygotic and germline variants using whole exome and ultra-deep duplex sequencing in paired uninvolved margin and primaty tumor samples from 126 breast cancer patients with differing survival outcomes, with skin or blood samples as reference. Pairs of uninvolved margin and blood samples were also collected for 15 reduction mammoplasty patients without personal or familial history of cancer, serving as controls.	HiSeq X Ten	22
EGAD50000000770	Investigation of post-zygotic and germline variants using whole exome and ultra-deep duplex sequencing in paired uninvolved margin and primary tumor samples from 126 breast cancer patients with differing survival outcomes, with skin or blood samples as reference. Pairs of uninvolved margin and blood samples were also collected for 15 reduction mammoplasty patients without personal or familial history of cancer, serving as controls.	HiSeq X Ten	408