Southern African Prostate Cancer Study (SAPCS) Data Access Committee

Dr Vanessa M. Hayes
vanessa.hayes@sydney.edu.au

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Dataset ID	Description	Technology	Samples
EGAD00001009067	The cohort (n=130) consists of prostate cancer patients from South Africa (n=123) and Brazil (n=7). For each patient, a pair of blood and tumour samples were collected. The sequencing data was mapped to hg38 reference. Blood BAMs are named with “-B” as suffix and tumour BAMs are named with “-T” as suffix.	HiSeq X Ten Illumina NovaSeq 6000	260
EGAD50000000982	Raw RNA-seq reads (FASTQ format) and Mapped sequencing reads (BAM format) of 20 Prostate cancer patients in Southern African Prostate Cancer Study (SAPCS). Each patient exhibit different pathogenic variations. The Illumina RNA-sequencing is performed from Blood extraction (from QIAamp RNA Blood Mini Kit). rRNA was removed prior using SortMeRNA. STAR aligner program was used for mapping to human genome GRCh38.p14, resulting in an average genome coverage of 9x.	unspecified	20
EGAD50000001626	new 70 germline WGS data of prostate cancer patients	Illumina NovaSeq 6000	70