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Southern African Prostate Cancer Study (SAPCS) 70 whole bloods

new 70 germline WGS data of prostate cancer patients

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Genomic data of SAPCS

SAPCS Data Access Committee The SAPCS Data Access Committee (DAC) consists of eight members, including clinicians, pathologists, researchers, local community and consumer representatives. The SAPCS-DAC is under management of a manager. Members will meet monthly (by zoom, when required) to consider requests. Quorum for decision-making will be a minimum of five members and include at least two of the SAPCS Directors. Decisions will be made by consensus. Application Procedures The SAPCS-DAC will consider requests for published data from all researchers. Data will only be released to researchers who can provide a statement of ethics approval from the IRB I Human Research Ethics Committee (HREC) of their host institution to safeguard patient rights. Before submitting a request, applicants are encouraged to confer with the main contact Prof. Hayes to discuss the appropriateness of the data for the proposed study and the feasibility of the request. The following information will be requested in applications for Data access: (i) The applicant's name, institution, email address, (ii) The research question/hypotheses to be tested, (iii) List of data required, (iv) Statistical justification for the number and types of cases required (where applicable), (v) Brief description of the technical approach, (vi) Evidence of the proposed technical approach's prior successful use (where applicable), (vi) IRB/HREC approval number (and copy of approval if requested) to conduct proposed research (external applicants). Decision-making As all data has been generated through peer-reviewed funding mechanisms, research projects may well be underway to address relevant questions, as such, priority will need to be given to already funded SAPCS research efforts. The SAPCS-DAC will make decisions on approval of access to data using the following criteria: (i) The track record of the applicants in the technical approach and likelihood of significant outcomes from the research proposed. (ii) Non-overlap with projects being undertaken by the SAPCS team (except with compelling justification). (iii) Alignment of the research purpose with patient’s informed consent and ethics approval (e.g., restrictions as to commercial research, or other requirements needing additional approval). (iv) Any other restrictions or conditions that may apply to the use or disclosure of the relevant data. The SAPCS-DAC can impose certain restrictions on all approvals, and/or specific restrictions on approvals, as follows: (i) No transfer to third parties allowed (all). (ii) Acknowledgment of the SAPCS in publications/presentations (all). (iii) A report of the results of the research to be provided to DAC after completion (or when requested). (iv) Researchers cannot utilize the data for commercial purposes (all). (v) Approval will not be given that excludes other researchers from accessing data (all). (vi) Approval might be time-limited exclusive rights for a particular research development (particular). After approval by the DAC, the Database Manager will organize for the data to be sent de-identified to the researchers or allow access through an established database. Responsibilities It is the responsibility of the applicants to: (i) Provide a research proposal that justifies the request for data (adequate preliminary data); (ii) consult with a SAPCS Director prior to making an application; (iii) submit an email request to SAPCS-DAC Manager; (iv) obtain appropriate IRB/HREC approval for the use of the data; (v) appropriately acknowledge SAPCS in publications using relevant data. It is the responsibility of Data Access Committee to: (i) Review applications and approve the release of data based on the scientific value of the research proposal that is not in conflict with current SAPCS approved/funded studies; (ii) coordinate data release, (iii) review the completed data and publication.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001132 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00008742100 bam 96.8 GB
EGAF00008742101 bam 97.3 GB
EGAF00008746255 bam 92.6 GB
EGAF00008746371 bam 105.4 GB
EGAF00008746443 bam 107.6 GB
EGAF00008746449 bam 106.4 GB
EGAF00008747212 bam 90.0 GB
EGAF00008747213 bam 95.5 GB
EGAF00008747214 bam 97.0 GB
EGAF00008747215 bam 99.1 GB
EGAF00008747216 bam 98.4 GB
EGAF00008747217 bam 102.0 GB
EGAF00008747218 bam 102.3 GB
EGAF00008747219 bam 102.5 GB
EGAF00008747220 bam 104.5 GB
EGAF00008747221 bam 107.1 GB
EGAF00008747222 bam 102.7 GB
EGAF00008747223 bam 91.5 GB
EGAF00008747224 bam 101.6 GB
EGAF00008747225 bam 104.2 GB
EGAF00008747226 bam 99.4 GB
EGAF00008747227 bam 108.1 GB
EGAF00008747228 bam 97.3 GB
EGAF00008747229 bam 121.4 GB
EGAF00008747230 bam 96.7 GB
EGAF00008747231 bam 122.8 GB
EGAF00008747237 bam 98.1 GB
EGAF00008747238 bam 103.2 GB
EGAF00008747239 bam 95.6 GB
EGAF00008747240 bam 101.7 GB
EGAF00008747241 bam 100.6 GB
EGAF00008747242 bam 98.4 GB
EGAF00008747243 bam 102.8 GB
EGAF00008747244 bam 103.0 GB
EGAF00008747245 bam 97.1 GB
EGAF00008747246 bam 107.5 GB
EGAF00008747247 bam 114.2 GB
EGAF00008747248 bam 107.5 GB
EGAF00008747249 bam 96.7 GB
EGAF00008747250 bam 100.1 GB
EGAF00008747251 bam 104.0 GB
EGAF00008747252 bam 102.0 GB
EGAF00008748031 bam 95.2 GB
EGAF00008748032 bam 99.8 GB
EGAF00008748033 bam 96.7 GB
EGAF00008748039 bam 105.5 GB
EGAF00008748040 bam 129.0 GB
EGAF00008749109 bam 103.2 GB
EGAF00008749114 bam 105.7 GB
EGAF00008749116 bam 98.3 GB
EGAF00008749118 bam 107.3 GB
EGAF00008749121 bam 99.7 GB
EGAF00008755017 bam 98.2 GB
EGAF00008760570 bam 87.6 GB
EGAF00008760597 bam 177.6 GB
EGAF00008760598 bam 105.1 GB
EGAF00008766292 bam 91.0 GB
EGAF00008766297 bam 99.6 GB
EGAF00008769700 bam 98.8 GB
EGAF00008771167 bam 98.0 GB
EGAF00008771168 bam 103.1 GB
EGAF00008771169 bam 105.5 GB
EGAF00008771170 bam 104.6 GB
EGAF00008776173 bam 109.4 GB
EGAF00008776174 bam 103.0 GB
EGAF00008776175 bam 102.8 GB
EGAF00008776247 bam 134.0 GB
EGAF00008776248 bam 102.8 GB
EGAF00008856549 bam 99.8 GB
EGAF00008856660 bam 102.8 GB
70 Files (7.2 TB)