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Southern African Prostate Cancer Study (SAPCS) Ethnic Disparity

The cohort (n=130) consists of prostate cancer patients from South Africa (n=123) and Brazil (n=7). For each patient, a pair of blood and tumour samples were collected. The sequencing data was mapped to hg38 reference. Blood BAMs are named with “-B” as suffix and tumour BAMs are named with “-T” as suffix.

Request Access

Genomic data of SAPCS

SAPCS Data Access Committee The SAPCS Data Access Committee (DAC) consists of eight members, including clinicians, pathologists, researchers, local community and consumer representatives. The SAPCS-DAC is under management of a manager. Members will meet monthly (by zoom, when required) to consider requests. Quorum for decision-making will be a minimum of five members and include at least two of the SAPCS Directors. Decisions will be made by consensus. Application Procedures The SAPCS-DAC will consider requests for published data from all researchers. Data will only be released to researchers who can provide a statement of ethics approval from the IRB I Human Research Ethics Committee (HREC) of their host institution to safeguard patient rights. Before submitting a request, applicants are encouraged to confer with the main contact Prof. Hayes to discuss the appropriateness of the data for the proposed study and the feasibility of the request. The following information will be requested in applications for Data access: (i) The applicant's name, institution, email address, (ii) The research question/hypotheses to be tested, (iii) List of data required, (iv) Statistical justification for the number and types of cases required (where applicable), (v) Brief description of the technical approach, (vi) Evidence of the proposed technical approach's prior successful use (where applicable), (vi) IRB/HREC approval number (and copy of approval if requested) to conduct proposed research (external applicants). Decision-making As all data has been generated through peer-reviewed funding mechanisms, research projects may well be underway to address relevant questions, as such, priority will need to be given to already funded SAPCS research efforts. The SAPCS-DAC will make decisions on approval of access to data using the following criteria: (i) The track record of the applicants in the technical approach and likelihood of significant outcomes from the research proposed. (ii) Non-overlap with projects being undertaken by the SAPCS team (except with compelling justification). (iii) Alignment of the research purpose with patient’s informed consent and ethics approval (e.g., restrictions as to commercial research, or other requirements needing additional approval). (iv) Any other restrictions or conditions that may apply to the use or disclosure of the relevant data. The SAPCS-DAC can impose certain restrictions on all approvals, and/or specific restrictions on approvals, as follows: (i) No transfer to third parties allowed (all). (ii) Acknowledgment of the SAPCS in publications/presentations (all). (iii) A report of the results of the research to be provided to DAC after completion (or when requested). (iv) Researchers cannot utilize the data for commercial purposes (all). (v) Approval will not be given that excludes other researchers from accessing data (all). (vi) Approval might be time-limited exclusive rights for a particular research development (particular). After approval by the DAC, the Database Manager will organize for the data to be sent de-identified to the researchers or allow access through an established database. Responsibilities It is the responsibility of the applicants to: (i) Provide a research proposal that justifies the request for data (adequate preliminary data); (ii) consult with a SAPCS Director prior to making an application; (iii) submit an email request to SAPCS-DAC Manager; (iv) obtain appropriate IRB/HREC approval for the use of the data; (v) appropriately acknowledge SAPCS in publications using relevant data. It is the responsibility of Data Access Committee to: (i) Review applications and approve the release of data based on the scientific value of the research proposal that is not in conflict with current SAPCS approved/funded studies; (ii) coordinate data release, (iii) review the completed data and publication.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006425 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006474030 bam 121.7 GB
EGAF00006474031 bam 198.8 GB
EGAF00006474032 bam 93.8 GB
EGAF00006474033 bam 124.8 GB
EGAF00006474034 bam 108.5 GB
EGAF00006474035 bam 198.2 GB
EGAF00006474036 bam 77.7 GB
EGAF00006474037 bam 160.9 GB
EGAF00006474038 bam 114.3 GB
EGAF00006474039 bam 214.5 GB
EGAF00006474040 bam 95.4 GB
EGAF00006474041 bam 236.4 GB
EGAF00006474042 bam 86.1 GB
EGAF00006474043 bam 181.4 GB
EGAF00006474044 bam 113.9 GB
EGAF00006474045 bam 209.9 GB
EGAF00006474046 bam 90.6 GB
EGAF00006474047 bam 226.8 GB
EGAF00006474048 bam 104.5 GB
EGAF00006474049 bam 215.0 GB
EGAF00006474050 bam 81.6 GB
EGAF00006474051 bam 192.4 GB
EGAF00006474052 bam 76.6 GB
EGAF00006474053 bam 208.0 GB
EGAF00006474054 bam 97.1 GB
EGAF00006474055 bam 196.2 GB
EGAF00006474056 bam 100.1 GB
EGAF00006474057 bam 170.9 GB
EGAF00006474058 bam 103.8 GB
EGAF00006474059 bam 210.2 GB
EGAF00006474060 bam 95.2 GB
EGAF00006474061 bam 199.7 GB
EGAF00006474062 bam 92.0 GB
EGAF00006474063 bam 167.5 GB
EGAF00006474064 bam 107.3 GB
EGAF00006474065 bam 217.4 GB
EGAF00006474066 bam 99.7 GB
EGAF00006474067 bam 165.4 GB
EGAF00006474068 bam 98.1 GB
EGAF00006474069 bam 168.2 GB
EGAF00006474070 bam 98.3 GB
EGAF00006474071 bam 186.0 GB
EGAF00006474072 bam 94.3 GB
EGAF00006474073 bam 180.6 GB
EGAF00006474074 bam 90.9 GB
EGAF00006474075 bam 183.5 GB
EGAF00006474076 bam 95.7 GB
EGAF00006474077 bam 149.0 GB
EGAF00006474078 bam 81.7 GB
EGAF00006474079 bam 158.9 GB
EGAF00006474080 bam 97.6 GB
EGAF00006474081 bam 172.0 GB
EGAF00006474082 bam 107.5 GB
EGAF00006474083 bam 209.8 GB
EGAF00006474084 bam 121.3 GB
EGAF00006474085 bam 204.2 GB
EGAF00006474086 bam 74.3 GB
EGAF00006474087 bam 169.7 GB
EGAF00006474088 bam 89.5 GB
EGAF00006474089 bam 187.7 GB
EGAF00006474090 bam 82.3 GB
EGAF00006474091 bam 161.2 GB
EGAF00006474092 bam 67.0 GB
EGAF00006474093 bam 144.0 GB
EGAF00006474094 bam 75.8 GB
EGAF00006474095 bam 178.1 GB
EGAF00006474096 bam 82.7 GB
EGAF00006474097 bam 206.4 GB
EGAF00006474098 bam 99.2 GB
EGAF00006474099 bam 172.4 GB
EGAF00006474100 bam 93.8 GB
EGAF00006474101 bam 181.7 GB
EGAF00006474102 bam 72.2 GB
EGAF00006474103 bam 73.0 GB
EGAF00006474104 bam 92.4 GB
EGAF00006474105 bam 203.8 GB
EGAF00006474106 bam 108.2 GB
EGAF00006474107 bam 171.7 GB
EGAF00006474108 bam 111.1 GB
EGAF00006474109 bam 173.7 GB
EGAF00006474110 bam 110.9 GB
EGAF00006474111 bam 175.1 GB
EGAF00006474112 bam 95.0 GB
EGAF00006474113 bam 162.5 GB
EGAF00006474114 bam 82.5 GB
EGAF00006474115 bam 175.8 GB
EGAF00006474116 bam 88.8 GB
EGAF00006474117 bam 185.7 GB
EGAF00006474118 bam 80.2 GB
EGAF00006474119 bam 171.4 GB
EGAF00006474120 bam 97.3 GB
EGAF00006474121 bam 151.7 GB
EGAF00006474122 bam 96.2 GB
EGAF00006474123 bam 149.4 GB
EGAF00006474124 bam 92.2 GB
EGAF00006474125 bam 184.9 GB
EGAF00006474126 bam 85.8 GB
EGAF00006474127 bam 210.4 GB
EGAF00006474128 bam 112.7 GB
EGAF00006474129 bam 189.4 GB
EGAF00006474130 bam 101.0 GB
EGAF00006474131 bam 193.1 GB
EGAF00006474132 bam 72.9 GB
EGAF00006474133 bam 196.5 GB
EGAF00006474134 bam 79.1 GB
EGAF00006474135 bam 143.3 GB
EGAF00006474136 bam 84.0 GB
EGAF00006474137 bam 175.4 GB
EGAF00006474138 bam 100.2 GB
EGAF00006474139 bam 183.6 GB
EGAF00006474140 bam 100.4 GB
EGAF00006474141 bam 161.0 GB
EGAF00006474142 bam 81.6 GB
EGAF00006474143 bam 167.7 GB
EGAF00006474144 bam 86.5 GB
EGAF00006474145 bam 150.4 GB
EGAF00006474146 bam 112.8 GB
EGAF00006474147 bam 197.0 GB
EGAF00006474148 bam 104.0 GB
EGAF00006474149 bam 204.4 GB
EGAF00006474150 bam 117.2 GB
EGAF00006474151 bam 239.4 GB
EGAF00006474152 bam 96.6 GB
EGAF00006474153 bam 196.9 GB
EGAF00006474154 bam 100.3 GB
EGAF00006474155 bam 185.2 GB
EGAF00006474156 bam 83.6 GB
EGAF00006474157 bam 156.3 GB
EGAF00006474158 bam 87.6 GB
EGAF00006474159 bam 157.5 GB
EGAF00006474160 bam 101.7 GB
EGAF00006474161 bam 196.0 GB
EGAF00006474162 bam 91.0 GB
EGAF00006474163 bam 180.5 GB
EGAF00006474164 bam 88.2 GB
EGAF00006474165 bam 198.3 GB
EGAF00006474166 bam 103.0 GB
EGAF00006474167 bam 194.4 GB
EGAF00006474168 bam 97.2 GB
EGAF00006474169 bam 182.0 GB
EGAF00006474170 bam 91.6 GB
EGAF00006474171 bam 199.2 GB
EGAF00006474172 bam 114.1 GB
EGAF00006474173 bam 157.7 GB
EGAF00006474174 bam 91.8 GB
EGAF00006474175 bam 197.3 GB
EGAF00006474176 bam 93.9 GB
EGAF00006474177 bam 188.7 GB
EGAF00006474178 bam 83.4 GB
EGAF00006474179 bam 174.0 GB
EGAF00006474180 bam 90.4 GB
EGAF00006474181 bam 142.4 GB
EGAF00006474182 bam 96.0 GB
EGAF00006474183 bam 164.7 GB
EGAF00006474184 bam 108.8 GB
EGAF00006474185 bam 193.9 GB
EGAF00006474186 bam 80.0 GB
EGAF00006474187 bam 143.7 GB
EGAF00006474188 bam 84.4 GB
EGAF00006474189 bam 168.6 GB
EGAF00006474190 bam 78.5 GB
EGAF00006474191 bam 247.6 GB
EGAF00006474192 bam 110.4 GB
EGAF00006474193 bam 210.7 GB
EGAF00006474194 bam 107.9 GB
EGAF00006474195 bam 150.9 GB
EGAF00006474196 bam 115.0 GB
EGAF00006474197 bam 166.2 GB
EGAF00006474198 bam 80.4 GB
EGAF00006474199 bam 151.2 GB
EGAF00006474200 bam 92.5 GB
EGAF00006474201 bam 142.7 GB
EGAF00006474202 bam 124.1 GB
EGAF00006474203 bam 251.6 GB
EGAF00006474204 bam 86.5 GB
EGAF00006474205 bam 158.4 GB
EGAF00006474206 bam 113.5 GB
EGAF00006474207 bam 231.6 GB
EGAF00006474208 bam 100.4 GB
EGAF00006474209 bam 201.3 GB
EGAF00006474210 bam 112.2 GB
EGAF00006474211 bam 215.8 GB
EGAF00006474212 bam 124.8 GB
EGAF00006474213 bam 192.0 GB
EGAF00006474214 bam 117.6 GB
EGAF00006474215 bam 204.5 GB
EGAF00006474216 bam 111.3 GB
EGAF00006474217 bam 165.1 GB
EGAF00006474218 bam 130.7 GB
EGAF00006474219 bam 204.9 GB
EGAF00006474220 bam 100.7 GB
EGAF00006474221 bam 199.1 GB
EGAF00006474222 bam 94.0 GB
EGAF00006474223 bam 185.7 GB
EGAF00006474224 bam 97.6 GB
EGAF00006474225 bam 160.9 GB
EGAF00006474226 bam 81.3 GB
EGAF00006474227 bam 187.9 GB
EGAF00006474228 bam 99.7 GB
EGAF00006474229 bam 163.2 GB
EGAF00006474230 bam 99.0 GB
EGAF00006474231 bam 189.8 GB
EGAF00006474232 bam 117.0 GB
EGAF00006474233 bam 223.8 GB
EGAF00006474234 bam 132.7 GB
EGAF00006474235 bam 227.3 GB
EGAF00006474236 bam 98.8 GB
EGAF00006474237 bam 185.8 GB
EGAF00006474238 bam 86.3 GB
EGAF00006474239 bam 188.4 GB
EGAF00006474240 bam 124.4 GB
EGAF00006474241 bam 190.7 GB
EGAF00006474242 bam 174.3 GB
EGAF00006474243 bam 200.2 GB
EGAF00006474244 bam 95.2 GB
EGAF00006474245 bam 265.4 GB
EGAF00006474246 bam 119.4 GB
EGAF00006474247 bam 242.3 GB
EGAF00006474248 bam 104.0 GB
EGAF00006474249 bam 218.5 GB
EGAF00006474250 bam 112.8 GB
EGAF00006474251 bam 248.4 GB
EGAF00006474252 bam 115.5 GB
EGAF00006474253 bam 196.0 GB
EGAF00006474254 bam 106.6 GB
EGAF00006474255 bam 234.1 GB
EGAF00006474256 bam 87.2 GB
EGAF00006474257 bam 183.1 GB
EGAF00006474258 bam 101.0 GB
EGAF00006474259 bam 201.9 GB
EGAF00006474260 bam 88.7 GB
EGAF00006474261 bam 252.9 GB
EGAF00006474262 bam 109.5 GB
EGAF00006474263 bam 204.2 GB
EGAF00006474264 bam 97.0 GB
EGAF00006474265 bam 140.1 GB
EGAF00006474266 bam 93.3 GB
EGAF00006474267 bam 152.6 GB
EGAF00006474268 bam 97.5 GB
EGAF00006474269 bam 176.3 GB
EGAF00006474270 bam 129.6 GB
EGAF00006474271 bam 242.8 GB
EGAF00006474272 bam 99.5 GB
EGAF00006474273 bam 164.7 GB
EGAF00006474274 bam 94.4 GB
EGAF00006474275 bam 182.8 GB
EGAF00006474276 bam 97.1 GB
EGAF00006474277 bam 163.8 GB
EGAF00006474278 bam 85.2 GB
EGAF00006474279 bam 209.4 GB
EGAF00006474280 bam 121.4 GB
EGAF00006474281 bam 208.4 GB
EGAF00006474282 bam 80.6 GB
EGAF00006474283 bam 156.0 GB
EGAF00006474284 bam 92.7 GB
EGAF00006474285 bam 175.2 GB
EGAF00006474286 bam 143.1 GB
EGAF00006474287 bam 162.5 GB
EGAF00006474288 bam 106.6 GB
EGAF00006474289 bam 250.0 GB
260 Files (37.2 TB)