Institute of Neuropathology - University of Freiburg Medical Center

Dr Roman Sankowski
roman.sankowski@uniklinik-freiburg.de

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Dataset ID	Description	Technology	Samples
EGAD50000000044	Single-nucleus mRNA Sequencing of prenatal and postnatal samples from the brain and its border regions. Most samples were multiplexed with several samples run in one 10X reaction. A separate immune cell dataset was combined with published data from Braun et al 2023 and Yang et al 2021 integrated using harmony is included.	NextSeq 1000 NextSeq 550	11
EGAD50000000045	Single-cell RNA-sequencing. Some samples were analyzed using CITE-Seq and samples were multiplexed and run on the same 10X reaction	Illumina HiSeq 1000 NextSeq 1000 NextSeq 550	6
EGAD50000000046	mCEL-Seq2 analysis with reference mapping of human brain tissues and border regions	Illumina HiSeq 4000	17
EGAD50000000047	Single-nucleus fixed mRNA profiling of FFPE samples from patients after sex-mismatched blood stem cell transplantation and matched controls.	NextSeq 1000	5
EGAD50000001835	CNS nuclei were isolated from frozen specimen, stained with anti-NeuN and anti-Olig2, FACS purified (DAPI+NeuN-Olig2-), and analyzed with single nucleus RNA-seq. One batch of samples was also labelled with CMO and allows distinguishing indivudal samples within the analysis. A combined seurat object was generated to include all the analyses and samples were integrated using Harmony integration.	NextSeq 1000 NextSeq 500 NextSeq 550	81