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Tumor Profiler DAC

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Dr Nora C Toussaint
nora.toussaint@sdsc.ethz.ch

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This DAC controls 6 datasets

Dataset ID	Description	Technology	Samples
EGAD50000000822	The dataset contains bulk transcriptomics data from 23 patients with Acute Myeloid Leukemia (AML). Samples were collected from bone marrow or blood. Sequencing was performed in paired-end mode and sequencing data is provided in fastq format.	Illumina NovaSeq 6000	23
EGAD50000000823	The dataset contains single-cell RNA seq data from 23 patients with Acute Myeloid Leukemia (AML). Samples were collected from bone marrow or blood. Sequencing was performed in paired-end mode and sequencing data is provided in fastq format.	Illumina NovaSeq 6000 NextSeq 500	23
EGAD50000000824	The dataset contains single-cell DNA seq data from 21 patients with Acute Myeloid Leukemia (AML). Samples were collected from bone marrow or blood. Sequencing was performed in paired-end mode and sequencing data is provided in fastq format.	Illumina NovaSeq 6000 NextSeq 500	21
EGAD50000000851	The dataset contains bulk transcriptomics data from 80 samples from 77 different patients with melanoma. Samples were collected from the tumor. Sequencing was performed in paired-end mode and sequencing data is provided in fastq format.	Illumina NovaSeq 6000	80
EGAD50000000852	The dataset contains 10x Chromium single-cell DNA sequencing data from 63 samples from 60 different patients with melanoma. Samples were collected from the tumor. Sequencing was performed in paired-end mode and sequencing data is provided in fastq format.	Illumina NovaSeq 6000 NextSeq 500	63
EGAD50000000853	The dataset contains 10x Chromium single-cell transcriptomics data from 65 samples from 62 different patients with melanoma. Samples were collected from the tumor. Sequencing was performed in paired-end mode and sequencing data is provided in fastq format.	Illumina NovaSeq 6000 NextSeq 550	65