Exome capture sequencing of SCLC tumor/normal pairs and cell lines

27/05/2015
103 samples
DAC: EGAC00001000055
Technology: Illumina HiSeq 2000

Access Policy1 Study Files

Metadata

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GENENTECH DATA ACCESS COMMITTEEDATA ACCESS AGREEMENT

GENENTECH DATA ACCESS COMMITTEEDATA ACCESS AGREEMENT WITH COMMERCIAL ORGANIZATIONThis Data Access Agreement (“Agreement”) between Genentech, Inc. (“Genentech”) and User and User Organization (as defined below) governs the terms on which access will be granted to the genotype data obtained from Genentech.In signing this Agreement, User and User Organization agree to be bound by the terms and conditions of access set out in this Agreement.For the sake of clarity, the terms of access set out in this Agreement apply both to the User and the User Organization (as defined below). User Organization and User are referred to within the Agreement as “You” and “Your” shall be construed accordingly.Definitions: gRED means Genentech Research and Early Development.Data means all and any human genetic data obtained from Genentech and generated by gRED. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto.User means a researcher whose User Organization has previously completed this Data Access Agreement and has received acknowledgement of its acceptance.Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research.User Organization means the commercial organization at which the User is employed or affiliated.Genentech Data Access Committee means members of the gRED organization that is responsible for making the data access decisions for the genotype data generated by gRED.Terms and Conditions: In signing this Agreement:1.You agree to use the Data only for the advancement of medical research.2.You agree to preserve, at all times, the confidentiality of Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy.3.You agree not to attempt to link the Data provided under this Agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevant access committees.4.You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or program management. Should You wish to share the Data with a collaborator outside the same Organization, the third party must make a separate application for access to the Data.5.You agree to use the Data for the approved purpose and project described in your application; use of the Data for a new purpose or project will require a new application and approval.6.You shall be free to publish the results of the research using the Data for the approved purpose. You agree to acknowledge in any such publication that the research makes use of Data generated by Genentech/gRED.7.You accept that Genentech:a.bears no legal responsibility for the accuracy or comprehensiveness of the Data; and b.accepts no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason.8.You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted.9.You recognize that nothing in this Agreement shall operate to transfer to the User Organization any intellectual property rights relating to the Data. The User Organization has the right to develop intellectual property based on the comparisons with their own data. Any invention or discovery made by User and/or User Organization arising out of the use of the Data (each a “Data Invention”) shall be promptly disclosed to Genentech in writing. User Organization hereby grants to Genentech a royalty-free, fully-paid, non-exclusive license (i) to make, use and import such Data Invention for internal research purposes; and (ii) to make, use, offer to sell, sell and import such Data Invention to the extent necessary to commercialize Genentech product(s), which license shall be sublicensable to Genentech’s affiliates and development and commercialization collaborators on such product(s). 10.You agree that you will submit a report to the Genentech Data Access Committee, if requested, on completion of the agreed purpose. The Genentech Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Organization.11.(a) You agree to use the Data in accordance with all applicable laws, including but not limited to applicable data privacy laws.(b) The Genentech Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures. 12.This Agreement shall be effective as of the date of the last party to sign below (“Effective Date”) and shall terminate three (3) years after the Effective Date, unless terminated sooner pursuant to Section 13 below.13.You accept that this Agreement will terminate immediately upon any breach of this Agreement by You and You will be required to destroy any Data held. Either Party may terminate this Agreement upon thirty (30) days written notice for any reason. The following Sections of this Agreement shall survive its expiration or termination: Sections 1 – 10, 11(a), and 13. For and on behalf of User/Applicant:___________________________Signature of User/Applicant___________________________Print Name of User/Applicant___________________________Title___________________________DateFor and on behalf of User Organization:___________________________Signature of Organizational or Administrative Authority___________________________Print Name___________________________Title___________________________Name of User Organization___________________________DateFor Genentech, Inc.:___________________________Signature___________________________Print Name___________________________Title___________________________Date

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001000334	Genentech Small Cell Lung Cancer (SCLC) Screen	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size	Quality Report
EGAF00000127783	fastq.gz	7.3 GB	Report
EGAF00000127784	fastq.gz	7.4 GB	Report
EGAF00000127785	fastq.gz	10.9 GB	Report
EGAF00000127786	fastq.gz	11.1 GB	Report
EGAF00000127787	fastq.gz	5.6 GB	Report
EGAF00000127788	fastq.gz	5.5 GB	Report
EGAF00000127789	fastq.gz	11.9 GB	Report
EGAF00000127790	fastq.gz	12.2 GB	Report
EGAF00000127791	fastq.gz	3.2 GB	Report
EGAF00000127792	fastq.gz	3.2 GB	Report
EGAF00000127793	fastq.gz	6.9 GB	Report
EGAF00000127794	fastq.gz	7.0 GB	Report
EGAF00000127795	fastq.gz	5.1 GB	Report
EGAF00000127796	fastq.gz	5.1 GB	Report
EGAF00000127797	fastq.gz	8.7 GB	Report
EGAF00000127798	fastq.gz	8.8 GB	Report
EGAF00000127799	fastq.gz	5.3 GB	Report
EGAF00000127800	fastq.gz	5.3 GB	Report
EGAF00000127801	fastq.gz	6.1 GB	Report
EGAF00000127802	fastq.gz	6.1 GB	Report
EGAF00000127803	fastq.gz	5.5 GB	Report
EGAF00000127804	fastq.gz	5.4 GB	Report
EGAF00000127805	fastq.gz	5.0 GB	Report
EGAF00000127806	fastq.gz	5.0 GB	Report
EGAF00000127807	fastq.gz	8.3 GB	Report
EGAF00000127808	fastq.gz	8.6 GB	Report
EGAF00000127809	fastq.gz	11.2 GB	Report
EGAF00000127810	fastq.gz	11.3 GB	Report
EGAF00000127811	fastq.gz	6.3 GB	Report
EGAF00000127812	fastq.gz	6.3 GB	Report
EGAF00000127813	fastq.gz	13.8 GB	Report
EGAF00000127814	fastq.gz	14.2 GB	Report
EGAF00000127815	fastq.gz	5.7 GB	Report
EGAF00000127816	fastq.gz	5.8 GB	Report
EGAF00000127817	fastq.gz	8.1 GB	Report
EGAF00000127818	fastq.gz	8.2 GB	Report
EGAF00000127819	fastq.gz	5.6 GB	Report
EGAF00000127820	fastq.gz	5.5 GB	Report
EGAF00000127821	fastq.gz	7.9 GB	Report
EGAF00000127822	fastq.gz	7.9 GB	Report
EGAF00000127823	fastq.gz	8.3 GB	Report
EGAF00000127824	fastq.gz	8.5 GB	Report
EGAF00000127825	fastq.gz	5.1 GB	Report
EGAF00000127826	fastq.gz	5.1 GB	Report
EGAF00000127827	fastq.gz	10.9 GB	Report
EGAF00000127828	fastq.gz	11.2 GB	Report
EGAF00000127829	fastq.gz	7.6 GB	Report
EGAF00000127830	fastq.gz	7.6 GB	Report
EGAF00000127831	fastq.gz	5.0 GB	Report
EGAF00000127832	fastq.gz	5.0 GB	Report
EGAF00000127833	fastq.gz	6.1 GB	Report
EGAF00000127834	fastq.gz	5.9 GB	Report
EGAF00000127835	fastq.gz	4.2 GB	Report
EGAF00000127836	fastq.gz	4.3 GB	Report
EGAF00000127837	fastq.gz	9.1 GB	Report
EGAF00000127838	fastq.gz	9.2 GB	Report
EGAF00000127839	fastq.gz	4.9 GB	Report
EGAF00000127840	fastq.gz	4.9 GB	Report
EGAF00000127841	fastq.gz	5.0 GB	Report
EGAF00000127842	fastq.gz	5.0 GB	Report
EGAF00000127843	fastq.gz	8.2 GB	Report
EGAF00000127844	fastq.gz	8.5 GB	Report
EGAF00000127845	fastq.gz	8.2 GB	Report
EGAF00000127846	fastq.gz	8.3 GB	Report
EGAF00000127847	fastq.gz	5.8 GB	Report
EGAF00000127848	fastq.gz	5.9 GB	Report
EGAF00000127849	fastq.gz	17.1 GB	Report
EGAF00000127850	fastq.gz	17.2 GB	Report
EGAF00000127851	fastq.gz	7.7 GB	Report
EGAF00000127852	fastq.gz	7.8 GB	Report
EGAF00000127853	fastq.gz	3.7 GB	Report
EGAF00000127854	fastq.gz	3.7 GB	Report
EGAF00000127855	fastq.gz	5.2 GB	Report
EGAF00000127856	fastq.gz	5.2 GB	Report
EGAF00000127857	fastq.gz	5.3 GB	Report
EGAF00000127858	fastq.gz	5.3 GB	Report
EGAF00000127859	fastq.gz	6.9 GB	Report
EGAF00000127860	fastq.gz	6.9 GB	Report
EGAF00000127861	fastq.gz	12.6 GB	Report
EGAF00000127862	fastq.gz	12.9 GB	Report
EGAF00000127863	fastq.gz	14.7 GB	Report
EGAF00000127864	fastq.gz	14.6 GB	Report
EGAF00000127865	fastq.gz	5.4 GB	Report
EGAF00000127866	fastq.gz	5.4 GB	Report
EGAF00000127867	fastq.gz	11.8 GB	Report
EGAF00000127868	fastq.gz	12.1 GB	Report
EGAF00000127869	fastq.gz	4.6 GB	Report
EGAF00000127870	fastq.gz	4.6 GB	Report
EGAF00000127871	fastq.gz	8.7 GB	Report
EGAF00000127872	fastq.gz	8.8 GB	Report
EGAF00000127873	fastq.gz	8.3 GB	Report
EGAF00000127874	fastq.gz	8.4 GB	Report
EGAF00000127875	fastq.gz	8.9 GB	Report
EGAF00000127876	fastq.gz	9.0 GB	Report
EGAF00000127877	fastq.gz	10.7 GB	Report
EGAF00000127878	fastq.gz	10.9 GB	Report
EGAF00000127879	fastq.gz	7.4 GB	Report
EGAF00000127880	fastq.gz	7.6 GB	Report
EGAF00000127881	fastq.gz	5.1 GB	Report
EGAF00000127882	fastq.gz	5.1 GB	Report
EGAF00000127883	fastq.gz	6.7 GB	Report
EGAF00000127884	fastq.gz	6.7 GB	Report
EGAF00000127885	fastq.gz	10.7 GB	Report
EGAF00000127886	fastq.gz	10.9 GB	Report
EGAF00000127887	fastq.gz	5.1 GB	Report
EGAF00000127888	fastq.gz	5.1 GB	Report
EGAF00000127889	fastq.gz	7.8 GB	Report
EGAF00000127890	fastq.gz	7.8 GB	Report
EGAF00000127891	fastq.gz	5.8 GB	Report
EGAF00000127892	fastq.gz	5.8 GB	Report
EGAF00000127893	fastq.gz	5.0 GB	Report
EGAF00000127894	fastq.gz	5.0 GB	Report
EGAF00000127895	fastq.gz	6.8 GB	Report
EGAF00000127896	fastq.gz	7.0 GB	Report
EGAF00000127897	fastq.gz	6.8 GB	Report
EGAF00000127898	fastq.gz	6.6 GB	Report
EGAF00000127899	fastq.gz	12.3 GB	Report
EGAF00000127900	fastq.gz	12.4 GB	Report
EGAF00000127901	fastq.gz	5.4 GB	Report
EGAF00000127902	fastq.gz	5.3 GB	Report
EGAF00000127903	fastq.gz	7.8 GB	Report
EGAF00000127904	fastq.gz	7.9 GB	Report
EGAF00000127905	fastq.gz	5.7 GB	Report
EGAF00000127906	fastq.gz	5.7 GB	Report
EGAF00000127907	fastq.gz	5.1 GB	Report
EGAF00000127908	fastq.gz	5.0 GB	Report
EGAF00000127909	fastq.gz	5.9 GB	Report
EGAF00000127910	fastq.gz	5.9 GB	Report
EGAF00000127911	fastq.gz	20.4 GB	Report
EGAF00000127912	fastq.gz	20.1 GB	Report
EGAF00000127913	fastq.gz	3.9 GB	Report
EGAF00000127914	fastq.gz	3.8 GB	Report
EGAF00000127917	fastq.gz	5.4 GB	Report
EGAF00000127918	fastq.gz	5.4 GB	Report
EGAF00000127919	fastq.gz	7.8 GB	Report
EGAF00000127920	fastq.gz	8.1 GB	Report
EGAF00000127921	fastq.gz	6.6 GB	Report
EGAF00000127922	fastq.gz	6.6 GB	Report
EGAF00000127923	fastq.gz	9.4 GB	Report
EGAF00000127924	fastq.gz	10.0 GB	Report
EGAF00000127925	fastq.gz	5.9 GB	Report
EGAF00000127926	fastq.gz	5.9 GB	Report
EGAF00000127927	fastq.gz	2.9 GB	Report
EGAF00000127928	fastq.gz	2.9 GB	Report
EGAF00000127929	fastq.gz	7.8 GB	Report
EGAF00000127930	fastq.gz	7.8 GB	Report
EGAF00000127931	fastq.gz	4.7 GB	Report
EGAF00000127932	fastq.gz	4.7 GB	Report
EGAF00000127933	fastq.gz	5.9 GB	Report
EGAF00000127934	fastq.gz	5.8 GB	Report
EGAF00000127935	fastq.gz	9.8 GB	Report
EGAF00000127936	fastq.gz	10.0 GB	Report
EGAF00000127937	fastq.gz	6.4 GB	Report
EGAF00000127938	fastq.gz	6.4 GB	Report
EGAF00000127939	fastq.gz	8.5 GB	Report
EGAF00000127940	fastq.gz	8.6 GB	Report
EGAF00000127941	fastq.gz	5.3 GB	Report
EGAF00000127942	fastq.gz	5.3 GB	Report
EGAF00000127943	fastq.gz	10.2 GB	Report
EGAF00000127944	fastq.gz	10.4 GB	Report
EGAF00000127945	fastq.gz	4.6 GB	Report
EGAF00000127946	fastq.gz	4.6 GB	Report
EGAF00000127947	fastq.gz	16.5 GB	Report
EGAF00000127948	fastq.gz	16.6 GB	Report
EGAF00000127949	fastq.gz	6.6 GB	Report
EGAF00000127950	fastq.gz	6.8 GB	Report
EGAF00000127951	fastq.gz	7.7 GB	Report
EGAF00000127952	fastq.gz	7.9 GB	Report
EGAF00000127953	fastq.gz	12.8 GB	Report
EGAF00000127954	fastq.gz	13.2 GB	Report
EGAF00000127955	fastq.gz	12.1 GB	Report
EGAF00000127956	fastq.gz	12.4 GB	Report
EGAF00000127957	fastq.gz	6.0 GB	Report
EGAF00000127958	fastq.gz	5.9 GB	Report
EGAF00000127959	fastq.gz	9.3 GB	Report
EGAF00000127960	fastq.gz	9.2 GB	Report
EGAF00000127961	fastq.gz	8.0 GB	Report
EGAF00000127962	fastq.gz	8.2 GB	Report
EGAF00000127963	fastq.gz	8.0 GB	Report
EGAF00000127964	fastq.gz	8.0 GB	Report
EGAF00000127965	fastq.gz	5.7 GB	Report
EGAF00000127966	fastq.gz	5.6 GB	Report
EGAF00000127967	fastq.gz	4.9 GB	Report
EGAF00000127968	fastq.gz	4.9 GB	Report
EGAF00000127969	fastq.gz	3.8 GB	Report
EGAF00000127970	fastq.gz	3.8 GB	Report
EGAF00000127971	fastq.gz	5.2 GB	Report
EGAF00000127972	fastq.gz	5.2 GB	Report
EGAF00000127973	fastq.gz	3.2 GB	Report
EGAF00000127974	fastq.gz	3.2 GB	Report
EGAF00000127975	fastq.gz	12.4 GB	Report
EGAF00000127976	fastq.gz	12.9 GB	Report
EGAF00000127977	fastq.gz	4.2 GB	Report
EGAF00000127978	fastq.gz	4.1 GB	Report
EGAF00000127979	fastq.gz	5.2 GB	Report
EGAF00000127980	fastq.gz	5.2 GB	Report
EGAF00000127981	fastq.gz	3.8 GB	Report
EGAF00000127982	fastq.gz	3.8 GB	Report
EGAF00000127983	fastq.gz	4.9 GB	Report
EGAF00000127984	fastq.gz	4.8 GB	Report
EGAF00000127985	fastq.gz	5.4 GB	Report
EGAF00000127986	fastq.gz	5.4 GB	Report
EGAF00000127987	fastq.gz	8.3 GB	Report
EGAF00000127988	fastq.gz	8.5 GB	Report
EGAF00000788904	fastq.gz	6.1 GB	Report
EGAF00000788905	fastq.gz	6.0 GB	Report
206 Files (1.5 TB)