RNA sequencing of SCLC tumor/normal sample pairs and cell lines

27/05/2015
79 samples
DAC: EGAC00001000055
Technology: Illumina HiSeq 2000

Access Policy1 Study Files

Metadata

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GENENTECH DATA ACCESS COMMITTEEDATA ACCESS AGREEMENT

GENENTECH DATA ACCESS COMMITTEEDATA ACCESS AGREEMENT WITH COMMERCIAL ORGANIZATIONThis Data Access Agreement (“Agreement”) between Genentech, Inc. (“Genentech”) and User and User Organization (as defined below) governs the terms on which access will be granted to the genotype data obtained from Genentech.In signing this Agreement, User and User Organization agree to be bound by the terms and conditions of access set out in this Agreement.For the sake of clarity, the terms of access set out in this Agreement apply both to the User and the User Organization (as defined below). User Organization and User are referred to within the Agreement as “You” and “Your” shall be construed accordingly.Definitions: gRED means Genentech Research and Early Development.Data means all and any human genetic data obtained from Genentech and generated by gRED. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto.User means a researcher whose User Organization has previously completed this Data Access Agreement and has received acknowledgement of its acceptance.Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research.User Organization means the commercial organization at which the User is employed or affiliated.Genentech Data Access Committee means members of the gRED organization that is responsible for making the data access decisions for the genotype data generated by gRED.Terms and Conditions: In signing this Agreement:1.You agree to use the Data only for the advancement of medical research.2.You agree to preserve, at all times, the confidentiality of Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy.3.You agree not to attempt to link the Data provided under this Agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevant access committees.4.You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or program management. Should You wish to share the Data with a collaborator outside the same Organization, the third party must make a separate application for access to the Data.5.You agree to use the Data for the approved purpose and project described in your application; use of the Data for a new purpose or project will require a new application and approval.6.You shall be free to publish the results of the research using the Data for the approved purpose. You agree to acknowledge in any such publication that the research makes use of Data generated by Genentech/gRED.7.You accept that Genentech:a.bears no legal responsibility for the accuracy or comprehensiveness of the Data; and b.accepts no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason.8.You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted.9.You recognize that nothing in this Agreement shall operate to transfer to the User Organization any intellectual property rights relating to the Data. The User Organization has the right to develop intellectual property based on the comparisons with their own data. Any invention or discovery made by User and/or User Organization arising out of the use of the Data (each a “Data Invention”) shall be promptly disclosed to Genentech in writing. User Organization hereby grants to Genentech a royalty-free, fully-paid, non-exclusive license (i) to make, use and import such Data Invention for internal research purposes; and (ii) to make, use, offer to sell, sell and import such Data Invention to the extent necessary to commercialize Genentech product(s), which license shall be sublicensable to Genentech’s affiliates and development and commercialization collaborators on such product(s). 10.You agree that you will submit a report to the Genentech Data Access Committee, if requested, on completion of the agreed purpose. The Genentech Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Organization.11.(a) You agree to use the Data in accordance with all applicable laws, including but not limited to applicable data privacy laws.(b) The Genentech Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures. 12.This Agreement shall be effective as of the date of the last party to sign below (“Effective Date”) and shall terminate three (3) years after the Effective Date, unless terminated sooner pursuant to Section 13 below.13.You accept that this Agreement will terminate immediately upon any breach of this Agreement by You and You will be required to destroy any Data held. Either Party may terminate this Agreement upon thirty (30) days written notice for any reason. The following Sections of this Agreement shall survive its expiration or termination: Sections 1 – 10, 11(a), and 13. For and on behalf of User/Applicant:___________________________Signature of User/Applicant___________________________Print Name of User/Applicant___________________________Title___________________________DateFor and on behalf of User Organization:___________________________Signature of Organizational or Administrative Authority___________________________Print Name___________________________Title___________________________Name of User Organization___________________________DateFor Genentech, Inc.:___________________________Signature___________________________Print Name___________________________Title___________________________Date

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001000334	Genentech Small Cell Lung Cancer (SCLC) Screen	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size	Quality Report
EGAF00000127989	fastq.gz	1.9 GB	Report
EGAF00000127990	fastq.gz	1.9 GB	Report
EGAF00000127991	fastq.gz	2.9 GB	Report
EGAF00000127992	fastq.gz	3.0 GB	Report
EGAF00000127993	fastq.gz	2.4 GB	Report
EGAF00000127994	fastq.gz	2.4 GB	Report
EGAF00000127995	fastq.gz	1.8 GB	Report
EGAF00000127996	fastq.gz	1.8 GB	Report
EGAF00000127997	fastq.gz	1.4 GB	Report
EGAF00000127998	fastq.gz	1.4 GB	Report
EGAF00000127999	fastq.gz	3.2 GB	Report
EGAF00000128000	fastq.gz	3.3 GB	Report
EGAF00000128001	fastq.gz	2.0 GB	Report
EGAF00000128002	fastq.gz	2.0 GB	Report
EGAF00000128003	fastq.gz	3.6 GB	Report
EGAF00000128004	fastq.gz	3.6 GB	Report
EGAF00000128005	fastq.gz	1.9 GB	Report
EGAF00000128006	fastq.gz	1.9 GB	Report
EGAF00000128007	fastq.gz	2.9 GB	Report
EGAF00000128008	fastq.gz	3.0 GB	Report
EGAF00000128009	fastq.gz	2.1 GB	Report
EGAF00000128010	fastq.gz	2.2 GB	Report
EGAF00000128011	fastq.gz	4.6 GB	Report
EGAF00000128012	fastq.gz	4.7 GB	Report
EGAF00000128013	fastq.gz	1.9 GB	Report
EGAF00000128014	fastq.gz	1.9 GB	Report
EGAF00000128015	fastq.gz	2.3 GB	Report
EGAF00000128016	fastq.gz	2.3 GB	Report
EGAF00000128017	fastq.gz	2.4 GB	Report
EGAF00000128018	fastq.gz	2.5 GB	Report
EGAF00000128019	fastq.gz	1.9 GB	Report
EGAF00000128020	fastq.gz	1.9 GB	Report
EGAF00000128021	fastq.gz	1.9 GB	Report
EGAF00000128022	fastq.gz	2.0 GB	Report
EGAF00000128023	fastq.gz	3.2 GB	Report
EGAF00000128024	fastq.gz	3.2 GB	Report
EGAF00000128025	fastq.gz	2.3 GB	Report
EGAF00000128026	fastq.gz	2.4 GB	Report
EGAF00000128027	fastq.gz	2.1 GB	Report
EGAF00000128028	fastq.gz	2.1 GB	Report
EGAF00000128029	fastq.gz	4.5 GB	Report
EGAF00000128030	fastq.gz	4.5 GB	Report
EGAF00000128031	fastq.gz	2.2 GB	Report
EGAF00000128032	fastq.gz	2.2 GB	Report
EGAF00000128033	fastq.gz	4.0 GB	Report
EGAF00000128034	fastq.gz	4.0 GB	Report
EGAF00000128035	fastq.gz	4.0 GB	Report
EGAF00000128036	fastq.gz	4.1 GB	Report
EGAF00000128037	fastq.gz	2.2 GB	Report
EGAF00000128038	fastq.gz	2.2 GB	Report
EGAF00000128039	fastq.gz	2.7 GB	Report
EGAF00000128040	fastq.gz	2.7 GB	Report
EGAF00000128041	fastq.gz	6.2 GB	Report
EGAF00000128042	fastq.gz	6.3 GB	Report
EGAF00000128043	fastq.gz	3.3 GB	Report
EGAF00000128044	fastq.gz	3.3 GB	Report
EGAF00000128045	fastq.gz	1.9 GB	Report
EGAF00000128046	fastq.gz	1.9 GB	Report
EGAF00000128047	fastq.gz	1.9 GB	Report
EGAF00000128048	fastq.gz	2.0 GB	Report
EGAF00000128049	fastq.gz	2.3 GB	Report
EGAF00000128050	fastq.gz	2.3 GB	Report
EGAF00000128051	fastq.gz	2.2 GB	Report
EGAF00000128052	fastq.gz	2.3 GB	Report
EGAF00000128053	fastq.gz	4.0 GB	Report
EGAF00000128054	fastq.gz	4.0 GB	Report
EGAF00000128055	fastq.gz	4.3 GB	Report
EGAF00000128056	fastq.gz	4.3 GB	Report
EGAF00000128057	fastq.gz	2.2 GB	Report
EGAF00000128058	fastq.gz	2.3 GB	Report
EGAF00000128059	fastq.gz	1.8 GB	Report
EGAF00000128060	fastq.gz	1.8 GB	Report
EGAF00000128061	fastq.gz	1.3 GB	Report
EGAF00000128062	fastq.gz	1.3 GB	Report
EGAF00000128063	fastq.gz	4.1 GB	Report
EGAF00000128064	fastq.gz	4.1 GB	Report
EGAF00000128065	fastq.gz	3.3 GB	Report
EGAF00000128066	fastq.gz	3.3 GB	Report
EGAF00000128067	fastq.gz	3.7 GB	Report
EGAF00000128068	fastq.gz	3.7 GB	Report
EGAF00000128069	fastq.gz	3.5 GB	Report
EGAF00000128070	fastq.gz	3.6 GB	Report
EGAF00000128071	fastq.gz	1.6 GB	Report
EGAF00000128072	fastq.gz	1.6 GB	Report
EGAF00000128073	fastq.gz	6.3 GB	Report
EGAF00000128074	fastq.gz	6.4 GB	Report
EGAF00000128075	fastq.gz	7.0 GB	Report
EGAF00000128076	fastq.gz	7.0 GB	Report
EGAF00000128077	fastq.gz	4.1 GB	Report
EGAF00000128078	fastq.gz	4.1 GB	Report
EGAF00000128079	fastq.gz	3.3 GB	Report
EGAF00000128080	fastq.gz	3.3 GB	Report
EGAF00000128081	fastq.gz	1.9 GB	Report
EGAF00000128082	fastq.gz	1.9 GB	Report
EGAF00000128083	fastq.gz	1.6 GB	Report
EGAF00000128084	fastq.gz	1.6 GB	Report
EGAF00000128085	fastq.gz	2.0 GB	Report
EGAF00000128086	fastq.gz	2.0 GB	Report
EGAF00000128087	fastq.gz	1.2 GB	Report
EGAF00000128088	fastq.gz	1.3 GB	Report
EGAF00000128089	fastq.gz	2.5 GB	Report
EGAF00000128090	fastq.gz	2.5 GB	Report
EGAF00000128091	fastq.gz	1.7 GB	Report
EGAF00000128092	fastq.gz	1.7 GB	Report
EGAF00000128093	fastq.gz	2.0 GB	Report
EGAF00000128094	fastq.gz	2.0 GB	Report
EGAF00000128095	fastq.gz	3.3 GB	Report
EGAF00000128096	fastq.gz	3.3 GB	Report
EGAF00000128097	fastq.gz	1.9 GB	Report
EGAF00000128098	fastq.gz	2.0 GB	Report
EGAF00000128099	fastq.gz	1.6 GB	Report
EGAF00000128100	fastq.gz	1.7 GB	Report
EGAF00000128101	fastq.gz	1.9 GB	Report
EGAF00000128102	fastq.gz	2.0 GB	Report
EGAF00000128103	fastq.gz	4.6 GB	Report
EGAF00000128104	fastq.gz	4.6 GB	Report
EGAF00000128105	fastq.gz	5.0 GB	Report
EGAF00000128106	fastq.gz	5.1 GB	Report
EGAF00000128107	fastq.gz	5.3 GB	Report
EGAF00000128108	fastq.gz	5.4 GB	Report
EGAF00000128109	fastq.gz	8.0 GB	Report
EGAF00000128110	fastq.gz	8.0 GB	Report
EGAF00000128111	fastq.gz	4.8 GB	Report
EGAF00000128112	fastq.gz	4.8 GB	Report
EGAF00000128113	fastq.gz	3.8 GB	Report
EGAF00000128114	fastq.gz	3.8 GB	Report
EGAF00000128115	fastq.gz	4.4 GB	Report
EGAF00000128116	fastq.gz	4.4 GB	Report
EGAF00000128117	fastq.gz	5.2 GB	Report
EGAF00000128118	fastq.gz	5.2 GB	Report
EGAF00000128119	fastq.gz	4.8 GB	Report
EGAF00000128120	fastq.gz	4.9 GB	Report
EGAF00000128121	fastq.gz	4.7 GB	Report
EGAF00000128122	fastq.gz	4.8 GB	Report
EGAF00000128123	fastq.gz	7.3 GB	Report
EGAF00000128124	fastq.gz	7.3 GB	Report
EGAF00000128125	fastq.gz	4.9 GB	Report
EGAF00000128126	fastq.gz	4.9 GB	Report
EGAF00000128127	fastq.gz	4.3 GB	Report
EGAF00000128128	fastq.gz	4.4 GB	Report
EGAF00000128129	fastq.gz	3.8 GB	Report
EGAF00000128130	fastq.gz	3.8 GB	Report
EGAF00000128131	fastq.gz	4.7 GB	Report
EGAF00000128132	fastq.gz	4.7 GB	Report
EGAF00000128133	fastq.gz	4.5 GB	Report
EGAF00000128134	fastq.gz	4.5 GB	Report
EGAF00000128135	fastq.gz	5.5 GB	Report
EGAF00000128136	fastq.gz	5.5 GB	Report
EGAF00000128137	fastq.gz	6.5 GB	Report
EGAF00000128138	fastq.gz	6.6 GB	Report
EGAF00000128139	fastq.gz	5.0 GB	Report
EGAF00000128140	fastq.gz	5.0 GB	Report
EGAF00000128141	fastq.gz	4.6 GB	Report
EGAF00000128142	fastq.gz	4.6 GB	Report
EGAF00000128143	fastq.gz	5.0 GB	Report
EGAF00000128144	fastq.gz	5.1 GB	Report
EGAF00000128145	fastq.gz	4.5 GB	Report
EGAF00000128146	fastq.gz	4.5 GB	Report
158 Files (541.6 GB)