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Dataset Plasma-seq

We performed low coverage whole genome sequencing of plasma DNA from prostate cancer patients to establish copy number profiles on both a genome-wide and a gene-specific level. The data include plasma samples from prostate cacner patients (n=13), non-malignant controls (males, n=10 and females, n=9), plasma samples from pregnancies with aneuploid and euploid fetuses (n=4). Furthermore, we sequenced different tumor samples (n=6) of one patients and a serial dilution of HT29 in a background of normal DNA (n=9).

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CTC - Plasma-DNA - MONDO:0008315

European Genome-Phenome Archive c/o European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom To whom it may concern, This document refers to datasets specific for MONDO:0008315 which has been submitted to the European Genome Archive (EGA) for the restricted access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by Ellen Heitzer. There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by Ellen Heitzer Ellen Heitzer is a Postdoctoral Fellow and is authorized to approve researchers to have encrypted access to the data submitted to the EGA. Please be advised that Ellen Heitzer ( is authorized to upload data to the EGA for archiving and distribution as part of your submission process, which will enable approved researchers to have encrypted access to the data. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations. Sincerely, Michael R. Speicher Principle Investigator

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001000451 Other
EGAS00001000453 Resequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00000168251 fastq.gz 230.8 MB
EGAF00000168253 fastq.gz 577.7 MB
EGAF00000168290 fastq.gz 499.2 MB
EGAF00000168311 fastq.gz 312.8 MB
EGAF00000168312 fastq.gz 532.5 MB
EGAF00000168313 fastq.gz 498.2 MB
EGAF00000168314 fastq.gz 338.9 MB
EGAF00000168316 fastq.gz 292.6 MB
EGAF00000168318 fastq.gz 266.4 MB
EGAF00000168319 fastq.gz 351.5 MB
EGAF00000168320 fastq.gz 251.1 MB
EGAF00000168321 fastq.gz 546.2 MB
EGAF00000168322 fastq.gz 434.6 MB
EGAF00000168323 fastq.gz 798.8 MB
EGAF00000168324 fastq.gz 522.4 MB
EGAF00000168325 fastq.gz 596.5 MB
EGAF00000168326 fastq.gz 640.4 MB
EGAF00000168327 fastq.gz 881.8 MB
EGAF00000168328 fastq.gz 469.5 MB
EGAF00000168329 fastq.gz 908.0 MB
EGAF00000168330 fastq.gz 310.9 MB
EGAF00000168331 fastq.gz 246.9 MB
EGAF00000168332 fastq.gz 133.0 MB
EGAF00000168333 fastq.gz 693.8 MB
EGAF00000168334 fastq.gz 236.3 MB
EGAF00000168335 fastq.gz 322.6 MB
EGAF00000168336 fastq.gz 762.6 MB
EGAF00000168337 fastq.gz 448.9 MB
EGAF00000168338 fastq.gz 345.8 MB
EGAF00000168340 fastq.gz 436.6 MB
EGAF00000168341 fastq.gz 539.0 MB
EGAF00000168342 fastq.gz 206.0 MB
EGAF00000168343 fastq.gz 240.3 MB
EGAF00000168344 fastq.gz 322.4 MB
EGAF00000168345 fastq.gz 284.9 MB
EGAF00000168346 fastq.gz 742.6 MB
EGAF00000168347 fastq.gz 515.4 MB
EGAF00000168348 fastq.gz 339.3 MB
EGAF00000168349 fastq.gz 794.8 MB
EGAF00000168350 fastq.gz 311.9 MB
EGAF00000168351 fastq.gz 195.0 MB
EGAF00000168352 fastq.gz 332.5 MB
EGAF00000168353 fastq.gz 415.6 MB
EGAF00000168354 fastq.gz 423.6 MB
EGAF00000168355 fastq.gz 387.3 MB
EGAF00000168356 fastq.gz 263.8 MB
EGAF00000168357 fastq.gz 343.9 MB
EGAF00000168358 fastq.gz 305.2 MB
EGAF00000168359 fastq.gz 276.6 MB
EGAF00000168360 fastq.gz 297.9 MB
50 Files (21.4 GB)