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Dataset

Dataset Plasma-seq

Dataset ID	Technology	Samples
EGAD00001000364	Illumina MiSeq	50

Dataset Description

We performed low coverage whole genome sequencing of plasma DNA from prostate cancer patients to establish copy number profiles on both a genome-wide and a gene-specific level. The data include plasma samples from prostate cacner patients (n=13), non-malignant controls (males, n=10 and females, n=9), plasma samples from pregnancies with aneuploid and euploid fetuses (n=4). Furthermore, we sequenced different tumor samples (n=6) of one patients and a serial dilution of HT29 in a background of normal DNA (n=9).

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

DAC CTC - Plasma-DNA
Contact person: Ellen Heitzer
Email: ellen [dot] heitzer [at] medunigraz [dot] at
More details: EGAC00001000072

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This dataset is featured in 2 studies

Studies are experimental investigations of a particular phenomenon. e.g. case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients. Click on one of the Study IDs below to find out more.

Study ID	Study Title	Study Type
EGAS00001000451	Plasma-Seq of patients with metastatic prostate cancer	Other
EGAS00001000453	Identification of mutations and structural rearrangements in plasma DNA form metastatic prostate cancer patients	Resequencing

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This dataset is featured in 2 studies

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