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ICGC Benchmarking Exercise

The main objective of this benchmark is the comparison of the full sequencing pipeline of different ICGC partners, including procedures, methods and performance of library preparation and whole-genome deep-sequencing. A secondary objective will be a follow-up comparison of data analysis pipelines for identification of germline and somatic variants subsequent to the results of the ICGC Somatic Variant Calling Pipeline Benchmark.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001000433 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00000230728 bam 22.9 GB
EGAF00000230729 bam 19.8 GB
EGAF00000230730 bam 30.5 GB
EGAF00000230731 bam 30.6 GB
EGAF00000230732 bam 31.1 GB
EGAF00000230733 bam 31.2 GB
EGAF00000230734 bam 26.7 GB
EGAF00000230735 bam 27.0 GB
EGAF00000230736 bam 26.4 GB
EGAF00000231671 bam 35.1 GB
EGAF00000231672 bam 29.2 GB
11 Files (310.5 GB)