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Whole Genome, RNA, and ChIP Sequencing of matched brain tumor-normal pairs (ICGC)

Whole Genome Seq: Illumina HiSeq sequence data (with >30x coverage) were aligned to the hg19 human reference genome assembly using BWA (Li and Durbin, 2009);duplicate reads were removed from the final BAM file. No realignment or recalibration was performed. Paired-end RNA sequencing reads were mapped to the hg19 assembly of the human reference genome using BWA.Each ChIP-seq library was sequenced with two complete lanes on the Illumina HiSeq 2500 in the 101-bases paired-end rapid mode and aligned to hg19 using bwa.This resulted in the following coverage values (genome-wide, after deduplication, including all uniquely mapping reads):GBM103 macroH2A1: 17x H3K36me3: 20xMB59 macroH2A1: 11x H3K36me3: 11x

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001000565 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00000242514 bam 109.2 GB
EGAF00000242515 bam 49.5 GB
EGAF00000242516 bam 41.3 GB
EGAF00000242517 bam 6.3 GB
EGAF00000242518 bam 73.5 GB
EGAF00000242525 bam 80.0 GB
EGAF00000242526 bam 25.9 GB
EGAF00000242527 bam 27.7 GB
EGAF00000242528 bam 9.9 GB
EGAF00000242529 bam 76.5 GB
10 Files (499.8 GB)