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GoNL release 5 raw SNV calls

These files contain a total of 20.4M SNVs and the complete information output by the GATK UnifiedGenotyper v1.4 on all 767 GoNL samples. These calls are not trio-aware and all genotypes were reported regardless of their quality. Both filtered and passing calls are reported in these files. Filtered calls include (1) calls failing our VQSR threshold and (2) calls in the GoNL inaccessible genome.

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The Genome of the Netherlands Project Data Access Policy

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001000644 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00000498467 vcf.gz 6.0 GB
EGAF00000498468 vcf.gz 3.8 GB
EGAF00000498469 vcf.gz 3.7 GB
EGAF00000498470 vcf.gz 3.5 GB
EGAF00000498471 vcf.gz 2.6 GB
EGAF00000498472 vcf.gz 2.4 GB
EGAF00000498473 vcf.gz 2.2 GB
EGAF00000498474 vcf.gz 2.6 GB
EGAF00000498475 vcf.gz 2.2 GB
EGAF00000498476 vcf.gz 2.1 GB
EGAF00000498477 vcf.gz 1.7 GB
EGAF00000498478 vcf.gz 6.3 GB
EGAF00000498479 vcf.gz 1.7 GB
EGAF00000498480 vcf.gz 1.2 GB
EGAF00000498481 vcf.gz 1.1 GB
EGAF00000498482 vcf.gz 5.2 GB
EGAF00000498483 vcf.gz 5.3 GB
EGAF00000498484 vcf.gz 4.6 GB
EGAF00000498485 vcf.gz 4.7 GB
EGAF00000498486 vcf.gz 4.4 GB
EGAF00000498487 vcf.gz 4.1 GB
EGAF00000498488 vcf.gz 3.4 GB
EGAF00000498489 vcf.gz 2.6 GB
23 Files (77.4 GB)