Dataset

GoNL release 5 raw SNV calls

Dataset ID Technology Samples
EGAD00001000743 N/A 767

Dataset Description

These files contain a total of 20.4M SNVs and the complete information output by the GATK UnifiedGenotyper v1.4 on all 767 GoNL samples. These calls are not trio-aware and all genotypes were reported regardless of their quality. Both filtered and passing calls are reported in these files. Filtered calls include (1) calls failing our VQSR threshold and (2) calls in the GoNL inaccessible genome.

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

GoNL Data Access Committee of BBMRI-NL
Contact person: Elisa Hoekstra
Email: gonl [at] bbmri [dot] nl
More details: EGAC00001000146

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