GoNL release 5 raw SNV calls
These files contain a total of 20.4M SNVs and the complete information output by the GATK UnifiedGenotyper v1.4 on all 767 GoNL samples. These calls are not trio-aware and all genotypes were reported regardless of their quality. Both filtered and passing calls are reported in these files. Filtered calls include (1) calls failing our VQSR threshold and (2) calls in the GoNL inaccessible genome.
- 16/12/2015
- DAC: EGAC00001000146
The Genome of the Netherlands Project Data Access Policy
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001000644 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00000498467 | vcf.gz | 6.0 GB | ||
| EGAF00000498468 | vcf.gz | 3.8 GB | ||
| EGAF00000498469 | vcf.gz | 3.7 GB | ||
| EGAF00000498470 | vcf.gz | 3.5 GB | ||
| EGAF00000498471 | vcf.gz | 2.6 GB | ||
| EGAF00000498472 | vcf.gz | 2.4 GB | ||
| EGAF00000498473 | vcf.gz | 2.2 GB | ||
| EGAF00000498474 | vcf.gz | 2.6 GB | ||
| EGAF00000498475 | vcf.gz | 2.2 GB | ||
| EGAF00000498476 | vcf.gz | 2.1 GB | ||
| EGAF00000498477 | vcf.gz | 1.7 GB | ||
| EGAF00000498478 | vcf.gz | 6.3 GB | ||
| EGAF00000498479 | vcf.gz | 1.7 GB | ||
| EGAF00000498480 | vcf.gz | 1.2 GB | ||
| EGAF00000498481 | vcf.gz | 1.1 GB | ||
| EGAF00000498482 | vcf.gz | 5.2 GB | ||
| EGAF00000498483 | vcf.gz | 5.3 GB | ||
| EGAF00000498484 | vcf.gz | 4.6 GB | ||
| EGAF00000498485 | vcf.gz | 4.7 GB | ||
| EGAF00000498486 | vcf.gz | 4.4 GB | ||
| EGAF00000498487 | vcf.gz | 4.1 GB | ||
| EGAF00000498488 | vcf.gz | 3.4 GB | ||
| EGAF00000498489 | vcf.gz | 2.6 GB | ||
| 23 Files (77.4 GB) | ||||