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GoNL release 5 haplotype panel

The samples in this panel come from 250 families: 248 parents-child trios and 2 parent-child duos. As the children do not provide additional haplotypes or population information, they were excluded from the panel. The samples present in the release are composed of 248 couples, 2 single individuals and 1 sample composed from the 2 haplotypes from the duo's children transmitted by their missing parent. The composed sample is named gonl-220c_223c.The files contain a total of 18.9M SNVs and 1.1M INDELs in autosomal chromosomes. They were generated by phasing/imputing the SNVs (a) and INDELs (b) using MVNCall. Only sites passing filters are reported. Sites filtered as part of the GoNL inaccessible genome were kept (but flagged as filtered) and still may contain true positive calls but should be used with care as they are located in parts of the genome that are less well captured (systematic under or over-covered or low-mapping quality)

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The Genome of the Netherlands Project Data Access Policy

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001000644 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00000498490 vcf.gz 124.4 MB
EGAF00000498491 vcf.gz 78.9 MB
EGAF00000498492 vcf.gz 80.5 MB
EGAF00000498493 vcf.gz 77.1 MB
EGAF00000498494 vcf.gz 59.7 MB
EGAF00000498495 vcf.gz 53.2 MB
EGAF00000498496 vcf.gz 46.9 MB
EGAF00000498497 vcf.gz 50.7 MB
EGAF00000498498 vcf.gz 44.1 MB
EGAF00000498499 vcf.gz 46.3 MB
EGAF00000498500 vcf.gz 37.0 MB
EGAF00000498501 vcf.gz 134.8 MB
EGAF00000498502 vcf.gz 35.6 MB
EGAF00000498503 vcf.gz 22.5 MB
EGAF00000498504 vcf.gz 22.4 MB
EGAF00000498505 vcf.gz 114.7 MB
EGAF00000498506 vcf.gz 115.7 MB
EGAF00000498507 vcf.gz 103.3 MB
EGAF00000498508 vcf.gz 105.7 MB
EGAF00000498509 vcf.gz 94.8 MB
EGAF00000498510 vcf.gz 88.7 MB
EGAF00000498511 vcf.gz 70.1 MB
22 Files (1.6 GB)