About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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HCC.GNE exome dataset

Exome read sequences for 30 tumor-normal pairs for the study "Diverse modes of genomic alterations in Hepatocellular Carcinoma".

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GENENTECH DATA ACCESS COMMITTEEDATA ACCESS AGREEMENT

GENENTECH DATA ACCESS COMMITTEEDATA ACCESS AGREEMENT WITH COMMERCIAL ORGANIZATIONThis Data Access Agreement (“Agreement”) between Genentech, Inc. (“Genentech”) and User and User Organization (as defined below) governs the terms on which access will be granted to the genotype data obtained from Genentech.In signing this Agreement, User and User Organization agree to be bound by the terms and conditions of access set out in this Agreement.For the sake of clarity, the terms of access set out in this Agreement apply both to the User and the User Organization (as defined below). User Organization and User are referred to within the Agreement as “You” and “Your” shall be construed accordingly.Definitions: gRED means Genentech Research and Early Development.Data means all and any human genetic data obtained from Genentech and generated by gRED. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto.User means a researcher whose User Organization has previously completed this Data Access Agreement and has received acknowledgement of its acceptance.Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research.User Organization means the commercial organization at which the User is employed or affiliated.Genentech Data Access Committee means members of the gRED organization that is responsible for making the data access decisions for the genotype data generated by gRED.Terms and Conditions: In signing this Agreement:1.You agree to use the Data only for the advancement of medical research.2.You agree to preserve, at all times, the confidentiality of Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy.3.You agree not to attempt to link the Data provided under this Agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevant access committees.4.You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or program management. Should You wish to share the Data with a collaborator outside the same Organization, the third party must make a separate application for access to the Data.5.You agree to use the Data for the approved purpose and project described in your application; use of the Data for a new purpose or project will require a new application and approval.6.You shall be free to publish the results of the research using the Data for the approved purpose. You agree to acknowledge in any such publication that the research makes use of Data generated by Genentech/gRED.7.You accept that Genentech:a.bears no legal responsibility for the accuracy or comprehensiveness of the Data; and b.accepts no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason.8.You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted.9.You recognize that nothing in this Agreement shall operate to transfer to the User Organization any intellectual property rights relating to the Data. The User Organization has the right to develop intellectual property based on the comparisons with their own data. Any invention or discovery made by User and/or User Organization arising out of the use of the Data (each a “Data Invention”) shall be promptly disclosed to Genentech in writing. User Organization hereby grants to Genentech a royalty-free, fully-paid, non-exclusive license (i) to make, use and import such Data Invention for internal research purposes; and (ii) to make, use, offer to sell, sell and import such Data Invention to the extent necessary to commercialize Genentech product(s), which license shall be sublicensable to Genentech’s affiliates and development and commercialization collaborators on such product(s). 10.You agree that you will submit a report to the Genentech Data Access Committee, if requested, on completion of the agreed purpose. The Genentech Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Organization.11.(a) You agree to use the Data in accordance with all applicable laws, including but not limited to applicable data privacy laws.(b) The Genentech Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures. 12.This Agreement shall be effective as of the date of the last party to sign below (“Effective Date”) and shall terminate three (3) years after the Effective Date, unless terminated sooner pursuant to Section 13 below.13.You accept that this Agreement will terminate immediately upon any breach of this Agreement by You and You will be required to destroy any Data held. Either Party may terminate this Agreement upon thirty (30) days written notice for any reason. The following Sections of this Agreement shall survive its expiration or termination: Sections 1 – 10, 11(a), and 13. For and on behalf of User/Applicant:___________________________Signature of User/Applicant___________________________Print Name of User/Applicant___________________________Title___________________________DateFor and on behalf of User Organization:___________________________Signature of Organizational or Administrative Authority___________________________Print Name___________________________Title___________________________Name of User Organization___________________________DateFor Genentech, Inc.:___________________________Signature___________________________Print Name___________________________Title___________________________Date

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001000824 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00000583765 fastq.gz 7.8 GB Report
EGAF00000583766 fastq.gz 8.0 GB Report
EGAF00000583767 fastq.gz 11.5 GB Report
EGAF00000583768 fastq.gz 11.8 GB Report
EGAF00000583769 fastq.gz 4.3 GB Report
EGAF00000583770 fastq.gz 4.3 GB Report
EGAF00000583771 fastq.gz 3.6 GB Report
EGAF00000583772 fastq.gz 3.6 GB Report
EGAF00000583773 fastq.gz 7.7 GB Report
EGAF00000583774 fastq.gz 7.9 GB Report
EGAF00000583775 fastq.gz 8.1 GB Report
EGAF00000583776 fastq.gz 8.3 GB Report
EGAF00000583777 fastq.gz 4.1 GB Report
EGAF00000583778 fastq.gz 4.2 GB Report
EGAF00000583779 fastq.gz 4.5 GB Report
EGAF00000583780 fastq.gz 4.6 GB Report
EGAF00000583781 fastq.gz 4.3 GB Report
EGAF00000583782 fastq.gz 4.3 GB Report
EGAF00000583783 fastq.gz 4.2 GB Report
EGAF00000583784 fastq.gz 4.2 GB Report
EGAF00000583785 fastq.gz 6.3 GB Report
EGAF00000583786 fastq.gz 6.7 GB Report
EGAF00000583787 fastq.gz 8.1 GB Report
EGAF00000583788 fastq.gz 8.5 GB Report
EGAF00000583789 fastq.gz 4.4 GB Report
EGAF00000583790 fastq.gz 4.5 GB Report
EGAF00000583791 fastq.gz 5.4 GB Report
EGAF00000583792 fastq.gz 5.4 GB Report
EGAF00000583793 fastq.gz 6.5 GB Report
EGAF00000583794 fastq.gz 6.4 GB Report
EGAF00000583795 fastq.gz 6.6 GB Report
EGAF00000583796 fastq.gz 6.7 GB Report
EGAF00000583797 fastq.gz 5.1 GB Report
EGAF00000583798 fastq.gz 5.2 GB Report
EGAF00000583799 fastq.gz 4.2 GB Report
EGAF00000583800 fastq.gz 4.3 GB Report
EGAF00000583801 fastq.gz 5.8 GB Report
EGAF00000583802 fastq.gz 5.9 GB Report
EGAF00000583803 fastq.gz 5.1 GB Report
EGAF00000583804 fastq.gz 5.2 GB Report
EGAF00000583805 fastq.gz 12.0 GB Report
EGAF00000583806 fastq.gz 12.1 GB Report
EGAF00000583807 fastq.gz 5.7 GB Report
EGAF00000583808 fastq.gz 5.8 GB Report
EGAF00000583809 fastq.gz 6.3 GB Report
EGAF00000583810 fastq.gz 6.4 GB Report
EGAF00000583811 fastq.gz 6.9 GB Report
EGAF00000583812 fastq.gz 7.0 GB Report
EGAF00000583813 fastq.gz 13.5 GB Report
EGAF00000583814 fastq.gz 13.7 GB Report
EGAF00000583815 fastq.gz 17.8 GB Report
EGAF00000583816 fastq.gz 18.1 GB Report
EGAF00000583817 fastq.gz 6.2 GB Report
EGAF00000583818 fastq.gz 6.2 GB Report
EGAF00000583819 fastq.gz 13.3 GB Report
EGAF00000583820 fastq.gz 13.3 GB Report
EGAF00000583821 fastq.gz 7.2 GB Report
EGAF00000583822 fastq.gz 7.3 GB Report
EGAF00000583823 fastq.gz 6.6 GB Report
EGAF00000583824 fastq.gz 6.7 GB Report
EGAF00000583825 fastq.gz 6.0 GB Report
EGAF00000583826 fastq.gz 6.1 GB Report
EGAF00000583827 fastq.gz 5.9 GB Report
EGAF00000583828 fastq.gz 6.0 GB Report
EGAF00000583829 fastq.gz 3.6 GB Report
EGAF00000583830 fastq.gz 3.7 GB Report
EGAF00000583831 fastq.gz 3.0 GB Report
EGAF00000583832 fastq.gz 3.0 GB Report
EGAF00000583833 fastq.gz 5.9 GB Report
EGAF00000583834 fastq.gz 6.0 GB Report
EGAF00000583835 fastq.gz 5.2 GB Report
EGAF00000583836 fastq.gz 5.3 GB Report
EGAF00000583837 fastq.gz 6.1 GB Report
EGAF00000583838 fastq.gz 6.2 GB Report
EGAF00000583839 fastq.gz 6.3 GB Report
EGAF00000583840 fastq.gz 6.4 GB Report
EGAF00000583841 fastq.gz 6.0 GB Report
EGAF00000583842 fastq.gz 6.2 GB Report
EGAF00000583843 fastq.gz 5.1 GB Report
EGAF00000583844 fastq.gz 5.3 GB Report
EGAF00000583845 fastq.gz 4.8 GB Report
EGAF00000583846 fastq.gz 5.0 GB Report
EGAF00000583847 fastq.gz 6.7 GB Report
EGAF00000583848 fastq.gz 6.8 GB Report
EGAF00000583849 fastq.gz 5.6 GB Report
EGAF00000583850 fastq.gz 5.7 GB Report
EGAF00000583851 fastq.gz 6.1 GB Report
EGAF00000583852 fastq.gz 6.2 GB Report
EGAF00000583853 fastq.gz 7.0 GB Report
EGAF00000583854 fastq.gz 7.1 GB Report
EGAF00000583855 fastq.gz 7.5 GB Report
EGAF00000583856 fastq.gz 7.7 GB Report
EGAF00000583857 fastq.gz 5.6 GB Report
EGAF00000583858 fastq.gz 5.8 GB Report
EGAF00000583859 fastq.gz 7.8 GB Report
EGAF00000583860 fastq.gz 8.0 GB Report
EGAF00000583861 fastq.gz 8.2 GB Report
EGAF00000583862 fastq.gz 8.3 GB Report
EGAF00000583863 fastq.gz 8.1 GB Report
EGAF00000583864 fastq.gz 8.2 GB Report
EGAF00000583865 fastq.gz 20.1 GB Report
EGAF00000583866 fastq.gz 21.3 GB Report
EGAF00000583867 fastq.gz 7.9 GB Report
EGAF00000583868 fastq.gz 8.0 GB Report
EGAF00000583869 fastq.gz 7.5 GB Report
EGAF00000583870 fastq.gz 7.6 GB Report
EGAF00000583871 fastq.gz 9.1 GB Report
EGAF00000583872 fastq.gz 9.3 GB Report
EGAF00000583873 fastq.gz 7.6 GB Report
EGAF00000583874 fastq.gz 7.7 GB Report
EGAF00000583875 fastq.gz 8.6 GB Report
EGAF00000583876 fastq.gz 8.7 GB Report
EGAF00000583877 fastq.gz 7.1 GB Report
EGAF00000583878 fastq.gz 7.2 GB Report
EGAF00000583879 fastq.gz 7.2 GB Report
EGAF00000583880 fastq.gz 7.3 GB Report
EGAF00000583881 fastq.gz 7.1 GB Report
EGAF00000583882 fastq.gz 7.3 GB Report
EGAF00000583883 fastq.gz 7.6 GB Report
EGAF00000583884 fastq.gz 7.8 GB Report
120 Files (855.4 GB)