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Carcinosarcoma Exome Sequencing Data

Whole exome sequencing data from tumor and normal samples from carcinosarcoma (malignant mixed mullerian tumor) patients

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Carcinosarcoma Data Access Policy

DATA ACCESS AGREEMENT FOR PROJECT ENTITLED,“Genomic analyses of gynecologic carcinosarcomas reveal frequent mutations in chromatin remodeling genes”This agreement governs the terms on which access will be granted to the sequence data generated by Personal Genome Diagnostics (PGDX). In signing this agreement, you are agreeing to be bound by the terms and conditions of access set out in this agreement. For the sake of clarity, the terms of access set out in this agreement apply both to the User and the User’s Institution (as defined below). User Institution and User are referred to within the agreement as “You” and “Your” shall be construed accordingly. Definitions: Data means all and any human sequence data obtained from Personal Genome Diagnostics Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto. User means a researcher whose User Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User Institution means the organization at which the User is employed, affiliated or enrolled. Terms and Conditions: In signing this Agreement: 1.You agree to use the Data only for the advancement of medical research, according to the consent obtained from sample donors. 2.You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, you undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 3.You agree not to attempt to link the data provided under this agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevant access committees. 4.You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or program management. Should you wish to share the Data with a collaborator outside of the same Institution, the third party must make a separate application for access to the Data. 5.You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and approval. 6.You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, you will destroy earlier versions of the Data. 7.You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the data, and the role of the Personal Genome Diagnostics and the relevant primary collectors and their funders.8.You accept that Personal Genome Diagnostics, the original data creators, depositors or copyright holders, or the funders of the Data or any part of the Data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 9.You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out your research with the Data, or sale of all or part of the Data on any media is not permitted. 10.You recognize that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User Institution has the right to develop intellectual property based on comparisons with their own data. 11.You accept that this agreement will terminate immediately upon any breach of this agreement by you and you will be required to destroy any Data held. 12.You accept that it may be necessary for Personal Genome Diagnostics or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, Personal Genome Diagnostics or its appointed agent will contact you to inform you of any changes and you agree that your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 13.You agree that you will submit a report to Personal Genome Diagnostics, if requested, on completion of the agreed purpose. The Carcinosarcoma Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 14.You accept that the Data is protected by and subject to international laws, and that you are responsible for ensuring compliance with any such applicable law. The Carcinosarcoma Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures. 15.This agreement shall be construed, interpreted and governed by the laws of the United States and shall be subject to the non-exclusive jurisdiction of the United States courts.  Publications Policy Personal Genome Diagnostics anticipates that data generated from the project will be used by others for purposes such as, but not limited to, developing new analytical methods and in understanding patterns of somatic mutation in human cancer. Authors who use data from the project must acknowledge Personal Genome Diagnostics and cite the relevant primary Personal Genome Diagnostics publication and funding mechanisms. Users should note that the Personal Genome Diagnostics bears no responsibility for the further analysis, interpretation, or consequences of the further analysis of these data, over and above that published by Personal Genome Diagnostics. For and on behalf of User: Name of Applicant(s):_____________________________________ _____________________________________ _____________________________________ _____________________________________ Signature of Applicant(s): _____________________________________ _____________________________________ _____________________________________ _____________________________________ Date:_____________________________________ For and on behalf of User Institution: Signature of Institutional or Administrative Authority: ______________________________________ Print name: ______________________________________ User Institution: ______________________________________ Date:______________________________________ WHEN SUBMITTING THIS DOCUMENT, PLEASE INCLUDE ALL PAGES OF THE AGREEMENT WITH THIS SIGNATURE PAGE

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001000941 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00000604082 fastq.gz 13.9 GB
EGAF00000604083 fastq.gz 14.4 GB
EGAF00000604084 fastq.gz 13.2 GB
EGAF00000604085 fastq.gz 13.8 GB
EGAF00000604086 fastq.gz 12.4 GB
EGAF00000604087 fastq.gz 13.1 GB
EGAF00000604088 fastq.gz 11.0 GB
EGAF00000604089 fastq.gz 11.6 GB
EGAF00000604090 fastq.gz 9.6 GB
EGAF00000604091 fastq.gz 10.1 GB
EGAF00000604092 fastq.gz 12.2 GB
EGAF00000604093 fastq.gz 12.9 GB
EGAF00000604094 fastq.gz 9.0 GB
EGAF00000604095 fastq.gz 9.3 GB
EGAF00000604096 fastq.gz 10.5 GB
EGAF00000604097 fastq.gz 10.7 GB
EGAF00000604098 fastq.gz 11.2 GB
EGAF00000604099 fastq.gz 11.9 GB
EGAF00000604100 fastq.gz 11.3 GB
EGAF00000604101 fastq.gz 12.0 GB
EGAF00000604102 fastq.gz 8.8 GB
EGAF00000604103 fastq.gz 9.2 GB
EGAF00000604104 fastq.gz 8.0 GB
EGAF00000604105 fastq.gz 8.1 GB
EGAF00000604106 fastq.gz 9.3 GB
EGAF00000604107 fastq.gz 9.6 GB
EGAF00000604108 fastq.gz 8.7 GB
EGAF00000604109 fastq.gz 9.1 GB
EGAF00000604110 fastq.gz 7.9 GB
EGAF00000604111 fastq.gz 8.1 GB
EGAF00000604112 fastq.gz 6.1 GB
EGAF00000604113 fastq.gz 6.3 GB
EGAF00000604114 fastq.gz 7.1 GB
EGAF00000604115 fastq.gz 7.5 GB
EGAF00000604116 fastq.gz 8.1 GB
EGAF00000604117 fastq.gz 8.4 GB
EGAF00000604118 fastq.gz 9.0 GB
EGAF00000604119 fastq.gz 9.4 GB
EGAF00000604120 fastq.gz 8.8 GB
EGAF00000604121 fastq.gz 8.7 GB
EGAF00000604122 fastq.gz 9.3 GB
EGAF00000604123 fastq.gz 9.2 GB
EGAF00000604124 fastq.gz 9.9 GB
EGAF00000604125 fastq.gz 10.1 GB
EGAF00000604126 fastq.gz 9.5 GB
EGAF00000604127 fastq.gz 9.6 GB
EGAF00000604128 fastq.gz 12.0 GB
EGAF00000604129 fastq.gz 12.4 GB
EGAF00000604130 fastq.gz 9.2 GB
EGAF00000604131 fastq.gz 9.5 GB
EGAF00000604132 fastq.gz 11.0 GB
EGAF00000604133 fastq.gz 11.4 GB
EGAF00000604134 fastq.gz 9.9 GB
EGAF00000604135 fastq.gz 10.3 GB
EGAF00000604136 fastq.gz 10.0 GB
EGAF00000604137 fastq.gz 10.2 GB
EGAF00000604138 fastq.gz 8.7 GB
EGAF00000604139 fastq.gz 9.2 GB
EGAF00000604140 fastq.gz 13.3 GB
EGAF00000604141 fastq.gz 14.0 GB
EGAF00000604142 fastq.gz 9.1 GB
EGAF00000604143 fastq.gz 9.6 GB
EGAF00000604144 fastq.gz 11.4 GB
EGAF00000604145 fastq.gz 12.0 GB
EGAF00000604146 fastq.gz 11.5 GB
EGAF00000604147 fastq.gz 12.0 GB
EGAF00000604148 fastq.gz 12.0 GB
EGAF00000604149 fastq.gz 12.5 GB
EGAF00000604150 fastq.gz 9.6 GB
EGAF00000604151 fastq.gz 10.0 GB
EGAF00000604152 fastq.gz 11.5 GB
EGAF00000604153 fastq.gz 11.9 GB
EGAF00000604154 fastq.gz 8.0 GB
EGAF00000604155 fastq.gz 8.3 GB
EGAF00000604156 fastq.gz 9.6 GB
EGAF00000604157 fastq.gz 10.1 GB
EGAF00000604158 fastq.gz 8.8 GB
EGAF00000604159 fastq.gz 9.2 GB
EGAF00000604160 fastq.gz 6.9 GB
EGAF00000604161 fastq.gz 7.2 GB
EGAF00000604162 fastq.gz 13.0 GB
EGAF00000604163 fastq.gz 13.3 GB
EGAF00000604164 fastq.gz 9.9 GB
EGAF00000604165 fastq.gz 2.2 GB
EGAF00000604166 fastq.gz 11.4 GB
EGAF00000604167 fastq.gz 11.6 GB
EGAF00000604168 fastq.gz 9.8 GB
EGAF00000604169 fastq.gz 9.8 GB
88 Files (891.6 GB)