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4 subjects, 12 brain regions, UKBEC

Brain samples for this dataset were provided by the Medical Research Council Sudden Death Brain and Tissue Bank (Edinburgh, UK). All four individuals sampled were of European descent, neurologically normal during life and confirmed to be neuropathologically normal by a consultant neuropathologist using histology performed on sections prepared from paraffin-embedded tissue blocks. Twelve regions of the central nervous system were sampled from each individual. The regions studied were: cerebellar cortex, frontal cortex, temporal cortex, occipital cortex, hippocampus, the inferior olivary nucleus (sub-dissected from the medulla), putamen, substantia nigra, thalamus, hypothalamus, intralobular white matter and cervical spinal cord.

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The United Kingdom Brain Expression Consortium (UKBEC) DATA ACCESS AGREEMENT

The United Kingdom Brain Expression Consortium (UKBEC) DATA ACCESS AGREEMENT This agreement governs the terms on which access will be granted to the genotype data generated by the United Kingdom Brain Expression Consortium. In signing this agreement, You are agreeing to be bound by the terms and conditions of access set out in this agreement. For the sake of clarity, the terms of access set out in this agreement apply both to the User and the User’s Institution (as defined below). User Institution and User are referred to within the agreement as “You” and “Your” shall be construed accordingly. Definitions: Consortium means the United Kingdom Brain Expression Consortium, a group of Medical Research Council-funded investigators, a list of which can be found on the consortium website www.ukbec.org.Data means all and any human genetic or RNA-seq transcriptomic, together with allied phenotypic data, obtained from the Consortium. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto, or, if deceased, for whom the person’s next-of-kin has given his/her informed consent thereto. User means a researcher whose User Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User Institution means the organisation at which the User is employed, affiliated or enrolled. Terms and Conditions: In signing this Agreement: 1. You agree to use the Data only for the advancement of medical research on neurological disorders, according to the consent obtained from sample donors. 2. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 3. You agree not to attempt to link the data provided under this agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevent access committees. 4. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outwith the same Institution, the third party must make a separate application for access to the Data. 5. You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and approval. 6. You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 7. You agree to abide by the terms outlined in the Consortium 'Publications Policy' as set out in Schedule 1. 8. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the data, and the role of the Consortium and the relevant primary collectors and their funders. Suitable wording is provided in the Publications Policy given in Schedule 1. 9. You accept that the Consortium, the original data creators, depositors or copyright holders, or the funders of the Data or any part of the Data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 10. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 11. You recognise that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User Institution has the right to develop intellectual property based on comparisons with their own data. 12. You accept that this agreement will terminate immediately upon any breach of this agreement by You and You will be required to destroy any Data held. 13. You accept that it may be necessary for the Consortium or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, the Consortium or its appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 14. You agree that you will submit a report to the Consortium Data Access Committee, if requested, on completion of the agreed purpose. The Consortium Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 15. You accept that the Data is protected by and subject to international laws, including but not limited to the UK Data Protection Act 1998, and that You are responsible for ensuring compliance with any such applicable law. The Consortium Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the EAA. 16. This agreement shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the non-exclusive jurisdiction of the English courts. SCHEDULE 1 Publications Policy Authors who use data from the project are requested to send a draft of the manuscript to one of the UKBEC Principal Investigators, and to include UKBEC as a consortium author. Many submitting journals, and also Pubmed, will allow a footnote listing consortium members. In this case, please contact a UKBEC member for an up-to-date list of Consortium members and their affiliations.Users should note that the Consortium bears no responsibility for the further analysis or interpretation of these data, over and above that published by the Consortium. For and on behalf of User: Name of Applicant(s): _____________________________________ _____________________________________ _____________________________________ _____________________________________ Signature of Applicant(s): _____________________________________ _____________________________________ _____________________________________ _____________________________________ Date: _____________________________________ For and on behalf of User Institution: Signature of Institutional or Administrative Authority: ______________________________________ Print name: ______________________________________ User Institution: ______________________________________ Date: ______________________________________ WHEN SUBMITTING THIS DOCUMENT, PLEASE INCLUDE ALL PAGES OF THE AGREEMENT WITH THIS SIGNATURE PAGE

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001001170 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00000776763 bam 6.9 GB
EGAF00000776764 bam 6.9 GB
EGAF00000776765 bam 8.5 GB
EGAF00000776766 bam 16.5 GB
EGAF00000776767 bam 5.4 GB
EGAF00000776768 bam 5.5 GB
EGAF00000776769 bam 7.8 GB
EGAF00000776770 bam 7.6 GB
EGAF00000776771 bam 8.4 GB
EGAF00000776772 bam 8.1 GB
EGAF00000776773 bam 8.4 GB
EGAF00000776774 bam 10.0 GB
EGAF00000776775 bam 9.6 GB
EGAF00000776776 bam 9.7 GB
EGAF00000776777 bam 8.8 GB
EGAF00000776778 bam 9.1 GB
EGAF00000776779 bam 7.9 GB
EGAF00000776780 bam 8.3 GB
EGAF00000776781 bam 6.7 GB
EGAF00000776782 bam 8.2 GB
EGAF00000776783 bam 9.5 GB
EGAF00000776808 bam 7.0 GB
EGAF00000776809 bam 9.5 GB
EGAF00000776810 bam 8.7 GB
EGAF00000776811 bam 6.8 GB
EGAF00000776812 bam 7.6 GB
EGAF00000776813 bam 8.7 GB
EGAF00000776814 bam 7.9 GB
EGAF00000776815 bam 9.6 GB
EGAF00000776816 bam 5.9 GB
EGAF00000776817 bam 7.5 GB
EGAF00000776818 bam 6.8 GB
EGAF00000776819 bam 6.6 GB
EGAF00000776820 bam 7.4 GB
EGAF00000776821 bam 7.5 GB
EGAF00000776822 bam 7.9 GB
EGAF00000776823 bam 8.4 GB
EGAF00000776824 bam 10.0 GB
EGAF00000776825 bam 8.5 GB
EGAF00000776826 bam 8.8 GB
EGAF00000776827 bam 8.3 GB
EGAF00000776828 bam 9.3 GB
EGAF00000776829 bam 8.8 GB
EGAF00000776830 bam 9.2 GB
EGAF00000776831 bam 8.6 GB
EGAF00000776832 bam 9.1 GB
EGAF00000776833 bam 8.7 GB
EGAF00000777439 bam 9.5 GB
48 Files (400.0 GB)