APCDR AGV Project: Low coverage (4x-8x) sequence data from 3 African populations (VCFs)
Low coverage (4x-8x) Illumina HiSeq curated sequence data from 3 African populations from the AGV project; 100 Baganda from Uganda (4x), 100 Zulu from South Africa (4x), and 120 Gumuz, Wolayta, Oromo, Somali and Amhara from Ethiopia (8x). Pre-processed, jointly called and filtered with GATK, refined with Beagle3, phased with SHAPEIT2.
- 02/11/2016
- 1 sample
- DAC: EGAC00001000237
APCDR (African Partnership for Chronic Disease Research): Governance Framework
http://www.apcdr.org/
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001000960 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF00000903995 | vcf.gz | 96.4 MB | Report |
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| EGAF00000903996 | vcf.gz | 96.0 MB | Report |
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| EGAF00000907845 | vcf.gz | 84.5 MB | Report |
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| EGAF00000907846 | vcf.gz | 44.5 MB | Report |
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| EGAF00000907847 | vcf.gz | 58.3 MB | Report |
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| EGAF00000907848 | vcf.gz | 44.5 MB | Report |
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| EGAF00000907849 | vcf.gz | 126.0 MB | Report |
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| EGAF00000907850 | vcf.gz | 27.2 MB | Report |
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| EGAF00000907851 | vcf.gz | 26.9 MB | Report |
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| EGAF00000907852 | vcf.gz | 139.0 MB | Report |
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| EGAF00000907853 | vcf.gz | 64.0 MB | Report |
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| EGAF00000907854 | vcf.gz | 110.1 MB | Report |
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| EGAF00000907855 | vcf.gz | 55.8 MB | Report |
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| EGAF00000907856 | vcf.gz | 151.1 MB | Report |
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| EGAF00000907857 | vcf.gz | 62.7 MB | Report |
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| EGAF00000907858 | vcf.gz | 54.0 MB | Report |
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| EGAF00000907859 | vcf.gz | 69.2 MB | Report |
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| EGAF00000907860 | vcf.gz | 92.1 MB | Report |
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| EGAF00000907861 | vcf.gz | 165.1 MB | Report |
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| EGAF00000907862 | vcf.gz | 138.4 MB | Report |
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| EGAF00000907863 | vcf.gz | 113.7 MB | Report |
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| EGAF00000907864 | vcf.gz | 123.1 MB | Report |
|
| 22 Files (1.9 GB) | ||||