DAC

African Partnership for Chronic Disease Research (APCDR) DAC

Dac ID Contact Person Email Access Information
EGAC00001000237 Data Sharing datasharing [at] sanger [dot] ac [dot] uk No additional information is available

This DAC controls 20 datasets:

Dataset ID Description Technology Samples
EGAD00001001007 Low depth (4x) Illumina HiSeq raw sequence data for 100 unrelated Zulu from Durban area, South Africa. Illumina HiSeq 2000; 100
EGAD00001001008 Low depth (4x) Illumina HiSeq raw sequence data for 100 unrelated Baganda from rural Uganda. Illumina HiSeq 2000; 100
EGAD00001001663 Low coverage (4x-8x) Illumina HiSeq curated sequence data from 3 African populations from the AGV project; 100 Baganda from Uganda (4x), 100 Zulu from South Africa (4x), and 120 Gumuz, Wolayta, Oromo, Somali and Amhara from Ethiopia (8x). Pre-processed, jointly called and filtered with GATK, refined with Beagle3, phased with SHAPEIT2. 1
EGAD00001001639 Low depth (4x) Illumina HiSeq raw sequence data for 2000 Ugandans from various ethno-linguistic group from rural South-West Uganda (related individuals included). Illumina HiSeq 2000; 2000
EGAD00010000965 Array data from 4778 individuals from general population of rural Uganda Illumina HumanOmni2.5-8 BeadChip 4778
EGAD00010001046 APCDR AGV Project: Array data from 86 Sotho. Raw data, intensity files and post-QC Plink files. Illumina HumanOmni2-5_8v1_A 86
EGAD00010001053 APCDR AGV Project: Array data from 100 Banyarwanda. Raw data, intensity files and post-QC Plink files. Illumina HumanOmni2.5-4v1_B and HumanOmni2-5_8v1_A 100
EGAD00010001058 APCDR AGV Project: Array data from 100 Ga-Adangbe. Raw data, intensity files and post-QC Plink files. Illumina HumanOmni2.5-4v1_B and HumanOmni2-5_8v1_A 100
EGAD00010001055 APCDR AGV Project: Array data from 100 Baganda. Raw data, intensity files and post-QC Plink files. Illumina HumanOmni2.5-4v1_B and HumanOmni2-5_8v1_A 100
EGAD00010001049 APCDR AGV Project: Array data from 99 Kikuyu. Raw data, intensity files and post-QC Plink files. Illumina HumanOmni2.5-4v1_B 99
EGAD00010001045 APCDR AGV Project: Array data from 99 Igbo. Raw data, intensity files and post-QC Plink files. Illumina HumanOmni2.5-4v1_B 99
EGAD00010001057 APCDR AGV Project: Array data from 88 Mandinka. Raw data, intensity files and post-QC Plink files. Illumina HumanOmni2-5_8v1_A 88
EGAD00010001056 APCDR AGV Project: Array data from 100 Zulu. Raw data, intensity files and post-QC Plink files. Illumina HumanOmni2.5-4v1_B and HumanOmni2-5_8v1_A 100
EGAD00010001054 APCDR AGV Project: Array data from 74 Fula Illumina HumanOmni2-5_8v1_A 74
EGAD00010001051 APCDR AGV Project: Array data from 97 Barundi. Raw data, intensity files and post-QC Plink files. Illumina HumanOmni2-5_8v1_A 97
EGAD00010001050 APCDR AGV Project: Array data from 78 Wolof. Raw data, intensity files and post-QC Plink files. Illumina HumanOmni2-5_8v1_A 78
EGAD00010001048 APCDR AGV Project: Array data from 79 Jola. Raw data, intensity files and post-QC Plink files. Illumina HumanOmni2-5_8v1_A 79
EGAD00010001047 APCDR AGV Project: Array data from 107 Ethiopians (Amhara, Oromo, Somali; subset of Ethiopian Genome Project Genotyping). Raw data, intensity files and post-QC Plink files. Illumina HumanOmni2-5_8v1_A 107
EGAD00010001052 APCDR AGV Project: Array data from 100 Kalenjin. Raw data, intensity files and post-QC Plink files. Illumina HumanOmni2.5-4v1_B 100
EGAD00001003294 Integrated callset of high coverage Ethiopian genomes from the Pagani et al. 2015 AJHG paper (doi: http://dx.doi.org/10.1016/j.ajhg.2015.04.019) 5