Targeted sequencing using SPET for Mesothelioma.

06/04/2016
207 samples
DAC: EGAC00001000435
Technology: Illumina HiSeq 2000

Access Policy1 Study Files

Metadata

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Meso Data Access Policy

GENENTECH DATA ACCESS COMMITTEEDATA ACCESS AGREEMENT WITH COMMERCIAL ORGANIZATIONThis Data Access Agreement (“Agreement”) between Genentech, Inc. (“Genentech”) and User and User Organization (as defined below) governs the terms on which access will be granted to the genotype data obtained from Genentech.In signing this Agreement, User and User Organization agree to be bound by the terms and conditions of access set out in this Agreement.For the sake of clarity, the terms of access set out in this Agreement apply both to the User and the User Organization (as defined below). User Organization and User are referred to within the Agreement as “You” and “Your” shall be construed accordingly.Definitions: gRED means Genentech Research and Early Development.Data means all and any human genetic data obtained from Genentech and generated by gRED. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto.User means a researcher whose User Organization has previously completed this Data Access Agreement and has received acknowledgement of its acceptance.Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research.User Organization means the commercial organization at which the User is employed or affiliated.Genentech Data Access Committee means members of the gRED organization that is responsible for making the data access decisions for the genotype data generated by gRED.Terms and Conditions: In signing this Agreement:1.You agree to use the Data only for the advancement of medical research.2.You agree to preserve, at all times, the confidentiality of Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy.3.You agree not to attempt to link the Data provided under this Agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevant access committees.4.You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or program management. Should You wish to share the Data with a collaborator outside the same Organization, the third party must make a separate application for access to the Data.5.You agree to use the Data for the approved purpose and project described in your application; use of the Data for a new purpose or project will require a new application and approval.6.You shall be free to publish the results of the research using the Data for the approved purpose. You agree to acknowledge in any such publication that the research makes use of Data generated by Genentech/gRED.7.You accept that Genentech:a.bears no legal responsibility for the accuracy or comprehensiveness of the Data; and b.accepts no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason.8.You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted.9.You recognize that nothing in this Agreement shall operate to transfer to the User Organization any intellectual property rights relating to the Data. The User Organization has the right to develop intellectual property based on the comparisons with their own data. Any invention or discovery made by User and/or User Organization arising out of the use of the Data (each a “Data Invention”) shall be promptly disclosed to Genentech in writing. User Organization hereby grants to Genentech a royalty-free, fully-paid, non-exclusive license (i) to make, use and import such Data Invention for internal research purposes; and (ii) to make, use, offer to sell, sell and import such Data Invention to the extent necessary to commercialize Genentech product(s), which license shall be sublicensable to Genentech’s affiliates and development and commercialization collaborators on such product(s). 10.You agree that you will submit a report to the Genentech Data Access Committee, if requested, on completion of the agreed purpose. The Genentech Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Organization.11.(a) You agree to use the Data in accordance with all applicable laws, including but not limited to applicable data privacy laws.(b) The Genentech Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures. 12.This Agreement shall be effective as of the date of the last party to sign below (“Effective Date”) and shall terminate three (3) years after the Effective Date, unless terminated sooner pursuant to Section 13 below.13.You accept that this Agreement will terminate immediately upon any breach of this Agreement by You and You will be required to destroy any Data held. Either Party may terminate this Agreement upon thirty (30) days written notice for any reason. The following Sections of this Agreement shall survive its expiration or termination: Sections 1 – 10, 11(a), and 13. For and on behalf of User/Applicant:___________________________Signature of User/Applicant___________________________Print Name of User/Applicant___________________________Title___________________________DateFor and on behalf of User Organization:___________________________Signature of Organizational or Administrative Authority___________________________Print Name___________________________Title___________________________Name of User Organization___________________________DateFor Genentech, Inc.:___________________________Signature___________________________Print Name___________________________Title___________________________Date

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001001563	Genomic characterization of Malignant Pleural Mesothelioma.	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size	Quality Report
EGAF00001146782	fastq.gz	392.4 MB	Report
EGAF00001146783	fastq.gz	724.1 MB	Report
EGAF00001146784	fastq.gz	480.0 MB	Report
EGAF00001146785	fastq.gz	764.8 MB	Report
EGAF00001146786	fastq.gz	581.5 MB	Report
EGAF00001146787	fastq.gz	698.0 MB	Report
EGAF00001146788	fastq.gz	874.9 MB	Report
EGAF00001146789	fastq.gz	549.4 MB	Report
EGAF00001146790	fastq.gz	678.3 MB	Report
EGAF00001146791	fastq.gz	774.8 MB	Report
EGAF00001146792	fastq.gz	915.1 MB	Report
EGAF00001146793	fastq.gz	516.8 MB	Report
EGAF00001146794	fastq.gz	722.7 MB	Report
EGAF00001146795	fastq.gz	835.7 MB	Report
EGAF00001146796	fastq.gz	669.7 MB	Report
EGAF00001146797	fastq.gz	554.1 MB	Report
EGAF00001146798	fastq.gz	776.6 MB	Report
EGAF00001146799	fastq.gz	684.2 MB	Report
EGAF00001146800	fastq.gz	794.5 MB	Report
EGAF00001146801	fastq.gz	883.2 MB	Report
EGAF00001146802	fastq.gz	835.5 MB	Report
EGAF00001146803	fastq.gz	814.3 MB	Report
EGAF00001146804	fastq.gz	502.1 MB	Report
EGAF00001146805	fastq.gz	993.3 MB	Report
EGAF00001146806	fastq.gz	1.0 GB	Report
EGAF00001146807	fastq.gz	469.1 MB	Report
EGAF00001146808	fastq.gz	444.5 MB	Report
EGAF00001146809	fastq.gz	520.9 MB	Report
EGAF00001146810	fastq.gz	486.1 MB	Report
EGAF00001146811	fastq.gz	479.6 MB	Report
EGAF00001146812	fastq.gz	412.5 MB	Report
EGAF00001146813	fastq.gz	413.5 MB	Report
EGAF00001146814	fastq.gz	421.6 MB	Report
EGAF00001146815	fastq.gz	377.1 MB	Report
EGAF00001146816	fastq.gz	391.3 MB	Report
EGAF00001146817	fastq.gz	377.7 MB	Report
EGAF00001146818	fastq.gz	335.2 MB	Report
EGAF00001146819	fastq.gz	523.0 MB	Report
EGAF00001146820	fastq.gz	481.9 MB	Report
EGAF00001146821	fastq.gz	718.8 MB	Report
EGAF00001146822	fastq.gz	440.9 MB	Report
EGAF00001146823	fastq.gz	699.2 MB	Report
EGAF00001146824	fastq.gz	498.5 MB	Report
EGAF00001146825	fastq.gz	549.6 MB	Report
EGAF00001146826	fastq.gz	393.4 MB	Report
EGAF00001146827	fastq.gz	563.9 MB	Report
EGAF00001146828	fastq.gz	472.9 MB	Report
EGAF00001146829	fastq.gz	682.9 MB	Report
EGAF00001146830	fastq.gz	764.9 MB	Report
EGAF00001146831	fastq.gz	984.0 MB	Report
EGAF00001146832	fastq.gz	715.1 MB	Report
EGAF00001146833	fastq.gz	749.5 MB	Report
EGAF00001146834	fastq.gz	560.6 MB	Report
EGAF00001146835	fastq.gz	690.6 MB	Report
EGAF00001146836	fastq.gz	903.1 MB	Report
EGAF00001146837	fastq.gz	799.6 MB	Report
EGAF00001146838	fastq.gz	883.7 MB	Report
EGAF00001146839	fastq.gz	601.2 MB	Report
EGAF00001146840	fastq.gz	782.4 MB	Report
EGAF00001146841	fastq.gz	629.3 MB	Report
EGAF00001146842	fastq.gz	803.4 MB	Report
EGAF00001146843	fastq.gz	879.9 MB	Report
EGAF00001146844	fastq.gz	726.8 MB	Report
EGAF00001146845	fastq.gz	810.1 MB	Report
EGAF00001146846	fastq.gz	381.6 MB	Report
EGAF00001146847	fastq.gz	445.6 MB	Report
EGAF00001146848	fastq.gz	507.5 MB	Report
EGAF00001146849	fastq.gz	373.2 MB	Report
EGAF00001146850	fastq.gz	513.8 MB	Report
EGAF00001146851	fastq.gz	414.0 MB	Report
EGAF00001146852	fastq.gz	585.8 MB	Report
EGAF00001146853	fastq.gz	485.6 MB	Report
EGAF00001146854	fastq.gz	423.1 MB	Report
EGAF00001146855	fastq.gz	456.3 MB	Report
EGAF00001146856	fastq.gz	462.8 MB	Report
EGAF00001146857	fastq.gz	482.1 MB	Report
EGAF00001146858	fastq.gz	399.7 MB	Report
EGAF00001146859	fastq.gz	440.2 MB	Report
EGAF00001146860	fastq.gz	379.0 MB	Report
EGAF00001146861	fastq.gz	410.3 MB	Report
EGAF00001146862	fastq.gz	363.9 MB	Report
EGAF00001146863	fastq.gz	381.6 MB	Report
EGAF00001146864	fastq.gz	363.0 MB	Report
EGAF00001146865	fastq.gz	465.6 MB	Report
EGAF00001146866	fastq.gz	408.1 MB	Report
EGAF00001146867	fastq.gz	447.7 MB	Report
EGAF00001146868	fastq.gz	490.2 MB	Report
EGAF00001146869	fastq.gz	1.0 GB	Report
EGAF00001146870	fastq.gz	848.3 MB	Report
EGAF00001146871	fastq.gz	274.5 MB	Report
EGAF00001146872	fastq.gz	1.0 GB	Report
EGAF00001146873	fastq.gz	696.2 MB	Report
EGAF00001146874	fastq.gz	731.5 MB	Report
EGAF00001146875	fastq.gz	387.4 MB	Report
EGAF00001146876	fastq.gz	363.3 MB	Report
EGAF00001146877	fastq.gz	371.7 MB	Report
EGAF00001146878	fastq.gz	461.7 MB	Report
EGAF00001146879	fastq.gz	626.5 MB	Report
EGAF00001146880	fastq.gz	414.0 MB	Report
EGAF00001146881	fastq.gz	432.3 MB	Report
EGAF00001146882	fastq.gz	563.6 MB	Report
EGAF00001146883	fastq.gz	401.2 MB	Report
EGAF00001146884	fastq.gz	318.6 MB	Report
EGAF00001146885	fastq.gz	299.3 MB	Report
EGAF00001146886	fastq.gz	924.3 MB	Report
EGAF00001146887	fastq.gz	652.2 MB	Report
EGAF00001146888	fastq.gz	588.7 MB	Report
EGAF00001146889	fastq.gz	1.1 GB	Report
EGAF00001146890	fastq.gz	826.5 MB	Report
EGAF00001146891	fastq.gz	913.3 MB	Report
EGAF00001146892	fastq.gz	910.2 MB	Report
EGAF00001146893	fastq.gz	203.3 MB	Report
EGAF00001146894	fastq.gz	631.2 MB	Report
EGAF00001146895	fastq.gz	721.8 MB	Report
EGAF00001146896	fastq.gz	1.8 GB	Report
EGAF00001146897	fastq.gz	301.1 MB	Report
EGAF00001146898	fastq.gz	670.8 MB	Report
EGAF00001146899	fastq.gz	562.4 MB	Report
EGAF00001146900	fastq.gz	539.4 MB	Report
EGAF00001146901	fastq.gz	538.8 MB	Report
EGAF00001146902	fastq.gz	698.2 MB	Report
EGAF00001146903	fastq.gz	1.0 GB	Report
EGAF00001146904	fastq.gz	1.1 GB	Report
EGAF00001146905	fastq.gz	379.0 MB	Report
EGAF00001146906	fastq.gz	1.0 GB	Report
EGAF00001146907	fastq.gz	949.7 MB	Report
EGAF00001146908	fastq.gz	782.7 MB	Report
EGAF00001146909	fastq.gz	747.8 MB	Report
EGAF00001146910	fastq.gz	822.7 MB	Report
EGAF00001146911	fastq.gz	862.3 MB	Report
EGAF00001146912	fastq.gz	519.2 MB	Report
EGAF00001146913	fastq.gz	968.7 MB	Report
EGAF00001146914	fastq.gz	1.0 GB	Report
EGAF00001146915	fastq.gz	748.8 MB	Report
EGAF00001146916	fastq.gz	821.2 MB	Report
EGAF00001146917	fastq.gz	491.4 MB	Report
EGAF00001146918	fastq.gz	331.4 MB	Report
EGAF00001146919	fastq.gz	407.4 MB	Report
EGAF00001146920	fastq.gz	357.6 MB	Report
EGAF00001146921	fastq.gz	536.6 MB	Report
EGAF00001146922	fastq.gz	525.9 MB	Report
EGAF00001146923	fastq.gz	444.0 MB	Report
EGAF00001146924	fastq.gz	472.0 MB	Report
EGAF00001146925	fastq.gz	323.6 MB	Report
EGAF00001146926	fastq.gz	921.5 MB	Report
EGAF00001146927	fastq.gz	678.1 MB	Report
EGAF00001146928	fastq.gz	630.8 MB	Report
EGAF00001146929	fastq.gz	626.4 MB	Report
EGAF00001146930	fastq.gz	407.1 MB	Report
EGAF00001146931	fastq.gz	593.3 MB	Report
EGAF00001146932	fastq.gz	631.5 MB	Report
EGAF00001146933	fastq.gz	773.4 MB	Report
EGAF00001146934	fastq.gz	967.9 MB	Report
EGAF00001146935	fastq.gz	944.1 MB	Report
EGAF00001146936	fastq.gz	664.0 MB	Report
EGAF00001146937	fastq.gz	773.1 MB	Report
EGAF00001146938	fastq.gz	373.1 MB	Report
EGAF00001146939	fastq.gz	596.2 MB	Report
EGAF00001146940	fastq.gz	745.7 MB	Report
EGAF00001146941	fastq.gz	816.6 MB	Report
EGAF00001146942	fastq.gz	100.1 MB	Report
EGAF00001146943	fastq.gz	338.7 MB	Report
EGAF00001146944	fastq.gz	662.3 MB	Report
EGAF00001146945	fastq.gz	421.7 MB	Report
EGAF00001146946	fastq.gz	1.1 GB	Report
EGAF00001146947	fastq.gz	720.4 MB	Report
EGAF00001146948	fastq.gz	880.5 MB	Report
EGAF00001146949	fastq.gz	211.7 MB	Report
EGAF00001146950	fastq.gz	780.0 MB	Report
EGAF00001146951	fastq.gz	790.3 MB	Report
EGAF00001146952	fastq.gz	811.3 MB	Report
EGAF00001146953	fastq.gz	823.0 MB	Report
EGAF00001146954	fastq.gz	927.0 MB	Report
EGAF00001146955	fastq.gz	879.5 MB	Report
EGAF00001146956	fastq.gz	2.5 GB	Report
EGAF00001146957	fastq.gz	1.1 GB	Report
EGAF00001146958	fastq.gz	3.1 GB	Report
EGAF00001146959	fastq.gz	511.1 MB	Report
EGAF00001146960	fastq.gz	434.0 MB	Report
EGAF00001146961	fastq.gz	605.7 MB	Report
EGAF00001146962	fastq.gz	1.1 GB	Report
EGAF00001146963	fastq.gz	1.0 GB	Report
EGAF00001146964	fastq.gz	761.8 MB	Report
EGAF00001146965	fastq.gz	1.3 GB	Report
EGAF00001146966	fastq.gz	1.1 GB	Report
EGAF00001146967	fastq.gz	746.8 MB	Report
EGAF00001146968	fastq.gz	742.8 MB	Report
EGAF00001146969	fastq.gz	568.7 MB	Report
EGAF00001146970	fastq.gz	537.6 MB	Report
EGAF00001146971	fastq.gz	396.4 MB	Report
EGAF00001146972	fastq.gz	621.3 MB	Report
EGAF00001146973	fastq.gz	438.8 MB	Report
EGAF00001146974	fastq.gz	397.5 MB	Report
EGAF00001146975	fastq.gz	452.8 MB	Report
EGAF00001146976	fastq.gz	446.3 MB	Report
EGAF00001146977	fastq.gz	404.1 MB	Report
EGAF00001146978	fastq.gz	393.2 MB	Report
EGAF00001146979	fastq.gz	325.6 MB	Report
EGAF00001146980	fastq.gz	336.5 MB	Report
EGAF00001146981	fastq.gz	438.5 MB	Report
EGAF00001146982	fastq.gz	572.1 MB	Report
EGAF00001146983	fastq.gz	473.7 MB	Report
EGAF00001146984	fastq.gz	266.1 MB	Report
EGAF00001146985	fastq.gz	237.5 MB	Report
EGAF00001146986	fastq.gz	243.1 MB	Report
EGAF00001146987	fastq.gz	431.8 MB	Report
EGAF00001146988	fastq.gz	702.9 MB	Report
207 Files (133.2 GB)