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RNA-seq, ChIP-seq, ATAC-seq files for PCGP SJERG

RNA-seq, ChIP-seq, and ATAC-seq files for PCGP SJERG paper titled "Deregulation of DUX4 and ERG in acute lymphoblastic leukemia"

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DAC to obtain datasets submitted by St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project

Learn more about the PCGP, disease types, publications, the PCGP Data Access Committee, and instructions to access data via EGA: https://pecan.stjude.cloud/permalink/pcgp Complete the attached Data Access Agreement (DAA), adhering to the following guidance, and return it to pcgpdaccoordinator@stjude.org: - Requests must be made for individual datasets (EGAD ID), not full studies (EGAS ID). - A separate DAA must be submitted for each dataset AND all original pages must be included. - The first listed applicant should be the Principal Investigator, Head of Department, or Department Chair leading the project. This should not be a staff scientist or postdoctoral researcher. - The email address used to access the dataset(s) must be a work-related email, not a personal email. - The signature of the “Institutional or Administrative Authority” must be an individual with the authority to sign documents on behalf of the requesting institution. This individual is known as the Authorized Organizational Representative (AOR) and is typically someone in the requesting institution's legal department or grants office. Heads/Chairs of Departments cannot sign as the Institutional or Administrative Authority. - Not adhering to these policies will delay your application. Once we receive your completed application, the DAC review typically takes approximately 15-20 business days. - If we do not receive a completed DAA from you within 90 days, we will consider this application closed and reject your request in the EGA portal. You may resubmit later as needed.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001001923 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001304734 bam 10.3 GB
EGAF00001304735 bam 7.2 GB
EGAF00001304736 bam 7.4 GB
EGAF00001304737 bam 11.0 GB
EGAF00001304738 bam 10.1 GB
EGAF00001304739 bam 9.6 GB
EGAF00001304740 bam 9.3 GB
EGAF00001304741 bam 8.3 GB
EGAF00001304742 bam 11.0 GB
EGAF00001304743 bam 10.0 GB
EGAF00001304744 bam 10.4 GB
EGAF00001304745 bam 8.0 GB
EGAF00001304746 bam 11.3 GB
EGAF00001304747 bam 8.8 GB
EGAF00001304748 bam 7.2 GB
EGAF00001304749 bam 11.4 GB
EGAF00001304750 bam 11.6 GB
EGAF00001304751 bam 8.8 GB
EGAF00001304752 bam 10.0 GB
EGAF00001304753 bam 10.0 GB
EGAF00001305644 bam 7.4 GB
EGAF00001305645 bam 10.3 GB
EGAF00001305646 bam 9.8 GB
EGAF00001305647 bam 6.6 GB
EGAF00001305648 bam 6.4 GB
EGAF00001305649 bam 12.4 GB
EGAF00001305650 bam 11.8 GB
EGAF00001305651 bam 6.9 GB
EGAF00001305652 bam 11.6 GB
EGAF00001305653 bam 7.5 GB
EGAF00001305654 bam 9.1 GB
EGAF00001305655 bam 8.8 GB
EGAF00001655701 bam 4.1 GB
EGAF00001655702 bam 3.9 GB
EGAF00001655703 bam 6.8 GB
EGAF00001655704 bam 3.6 GB
EGAF00001655705 bam 3.8 GB
EGAF00001655706 bam 5.9 GB
EGAF00001655707 bam 5.3 GB
EGAF00001655708 bam 5.2 GB
EGAF00001655709 bam 4.6 GB
EGAF00001655710 bam 10.0 GB
EGAF00001655711 bam 10.0 GB
EGAF00001655712 bam 7.0 GB
EGAF00001655713 bam 7.0 GB
EGAF00001655714 bam 6.9 GB
EGAF00001655715 bam 6.9 GB
EGAF00001655716 bam 8.1 GB
EGAF00001655717 bam 7.0 GB
EGAF00001655718 bam 9.3 GB
EGAF00001655719 bam 6.0 GB
EGAF00001655720 bam 13.0 GB
EGAF00001655721 bam 10.3 GB
EGAF00001655722 bam 11.9 GB
EGAF00001655723 bam 8.4 GB
EGAF00001655724 bam 8.4 GB
EGAF00001655725 bam 3.5 GB
EGAF00001655726 bam 3.7 GB
EGAF00001655727 bam 7.9 GB
EGAF00001655728 bam 8.9 GB
EGAF00001655729 bam 9.0 GB
EGAF00001655730 bam 9.4 GB
62 Files (516.1 GB)