DAC

St. Jude Children’s Research Hospital – Washington University Pediatric Cancer Genome Project Steering Committee

Dac ID Contact Person Email Access Information
EGAC00001000044 PCGP Steering Committee PCGP_data_request [at] stjude [dot] org No additional information is available

This DAC controls 77 datasets:

Dataset ID Description Technology Samples
EGAD00001000269 OLD DATA FILES FOR SJMB - Superseded by EGAD00001001864 Illumina HiSeq 2000; 68
EGAD00001000160 DATA FILES FOR SJACT Illumina HiSeq 2000 16
EGAD00001000165 DATA FILES FOR SJINF Illumina HiSeq 2000 46
EGAD00001000261 Retinoblastoma whole genome sequencing Illumina HiSeq 2000; 8
EGAD00001000159 DATA FILES FOR SJOS Illumina HiSeq 2000 37
EGAD00001001053 DATA FILES FOR SJOS-WGS-2ndBatch Illumina HiSeq 2000; 27
EGAD00001001052 DATA FILES FOR SJTALL Illumina HiSeq 2000; 24
EGAD00001000259 DATA FILES FOR SJAMLM7 Illumina HiSeq 2000; 8
EGAD00001000163 DATA FILES FOR SJPHALL Illumina HiSeq 2000 18
EGAD00001000162 DATA FILES FOR SJEPD Illumina HiSeq 2000 44
EGAD00001003156 WGS files for SJMDS paper titled 'Genomic Landscape of Pediatric Myelodysplastic Syndromes' Illumina HiSeq 2000 (ILLUMINA) 4
EGAD00001000268 DATA FILES FOR SJCBF Illumina HiSeq 2000; 34
EGAD00001000135 Neuroblastoma whole genome sequencing Illumina HiSeq 2000 80
EGAD00001000352 DATA FILES FOR SJLGG Illumina HiSeq 2000; 7
EGAD00001000353 DATA FILES FOR SJLGG Illumina HiSeq 2000; 45
EGAD00001000161 DATA FILES FOR SJLGG Illumina HiSeq 2000 33
EGAD00001000164 DATA FILES FOR SJRHB Illumina HiSeq 2000, Illumina HiSeq 2000; 29
EGAD00010000462 SJLGG Case samples using Gene Expression Array Affymetrix_U133v2 75
EGAD00001000657 DATA FILES FOR Histone Capture bams Illumina HiSeq 2000; 962
EGAD00001000655 DATA FILES FOR Histone-NSD2_RNASeq Illumina HiSeq 2000; 8
EGAD00001000654 DATA FILES FOR BALL-PAX5 Illumina HiSeq 2000; 153
EGAD00001000695 DATA FILES FOR SJLGG Illumina HiSeq 2000; 46
EGAD00001000260 Hypodiploid acute lymphoblastic leukemia whole genome sequencing Illumina HiSeq 2000; 40
EGAD00001000878 DATA FILES FOR SJRHB RNA-Seq Illumina HiSeq 2000; 42
EGAD00001000806 Whole Genome Sequencing (WGS) for St. Jude High Grade Glioma (HGG) study Illumina HiSeq 2000 (ILLUMINA) 63
EGAD00010000698 PCGP INF ALL SNP6 0
EGAD00001001098 DATA FILES FOR SJINF RNASeq Illumina HiSeq 2000; 63
EGAD00001001245 DATA FILES FOR PCGP SJINF WES Illumina HiSeq 2000; 40
EGAD00001001246 DATA FILES FOR PCGP SJMEL WXS Illumina HiSeq 2000; 28
EGAD00001001247 DATA FILES FOR PCGP SJMEL RNASEQ Illumina HiSeq 2000; 7
EGAD00001000853 DATA FILES FOR SJEPD Illumina HiSeq 2000; 37
EGAD00001000854 DATA FILES FOR SJEPD Illumina HiSeq 2000; 77
EGAD00001000807 Whole Exome Sequencing (WES) for St. Jude High Grade Glioma (HGG) study Illumina HiSeq 2000; 148
EGAD00001000793 RNA sequencing (RNA-Seq) for St. Jude High Grade Glioma (HGG) study Illumina HiSeq 2000; 75
EGAD00001001016 DATA FILES FOR SJPhLike-RNASeq Illumina HiSeq 2000; 125
EGAD00001000976 WGS DATA FILES FOR SJPhLike Illumina HiSeq 2000; 80
EGAD00010000596 PCGP Ph-likeALL GEA 837
EGAD00010000598 PCGP Ph-likeALL SNP6 1724
EGAD00001001020 DATA FILES FOR SJEWS-WGS Illumina HiSeq 2000; 38
EGAD00001001032 DATA FILES FOR SJMEL-WGS Illumina HiSeq 2000; 12
EGAD00001001045 DATA FILES FOR SJRB Illumina HiSeq 2000; 20
EGAD00001001054 DATA FILES FOR Ph-likeALL WES Illumina HiSeq 2000; 23
EGAD00001001059 DATA FILES FOR SJRHB-WES Illumina HiSeq 2000; 56
EGAD00001001864 DATA FILES FOR PCGP MB WGS - Supersedes (EGAD00001000269) Illumina HiSeq 2000; 76
EGAD00010000696 PCGP ETP ALL SNP6 0
EGAD00001001248 DATA FILES FOR PCGP SJETP WXS Illumina HiSeq 2000; 13
EGAD00001001352 Data files for CONSERTING (WGS) Illumina HiSeq 2000; 38
EGAD00001001415 DATA FILES FOR PCGP Dyer_iPSC WGS Illumina HiSeq 2000; 2
EGAD00001001416 DATA FILES FOR PCGP Dyer_iPSC TEBS Illumina HiSeq 2000; 18
EGAD00001001418 DATA FILES FOR PCGP Dyer_iPSC 5hmc Illumina HiSeq 2000; 8
EGAD00001001665 LGG Epilepsy Cohort WXS Illumina HiSeq 2000; 61
EGAD00001001664 LGG Epilepsy Cohort WGS Illumina HiSeq 2000; 18
EGAD00001001666 LGG Epilepsy Cohort RNA-Seq Illumina HiSeq 2000; 34
EGAD00001001433 PCGP Germline Study Whole Exome Sequencing Illumina HiSeq 2000;ILLUMINA, Illumina HiSeq 2000; 906
EGAD00001001056 Illumina HiSeq 2000; 7
EGAD00001003154 RNA-Seq files for SJOS study Illumina HiSeq 2000;ILLUMINA 14
EGAD00001001432 PCGP Germline Study Whole Genome Sequencing Illumina HiSeq 2000;ILLUMINA, Illumina HiSeq 2000; 1337
EGAD00001003432 Illumina HiSeq 2000;ILLUMINA 20
EGAD00001002667 Additional files for "The Genomic Landscape of Core-Binding Factor Acute Myeloid Leukemias" (EGAS00001000349). This dataset includes the processed Excap data referenced in this paper. Illumina HiSeq 2000;ILLUMINA 327
EGAD00001002530 Additional files for "The Genomic Landscape of Core-Binding Factor Acute Myeloid Leukemias" (EGAS00001000349). This dataset includes the processed RNASeq data referenced in this paper. Illumina HiSeq 2000;ILLUMINA 36
EGAD00001002676 DATA FILES FOR PCGP SJERG (WGS) Illumina HiSeq 2000;ILLUMINA 44
EGAD00001002677 DATA FILES FOR PCGP SJERG (WXS) Illumina HiSeq 2000;ILLUMINA 42
EGAD00001002679 This dataset contains WES files for the SJACT cohort associated with the paper "Genetic landscape of pediatric Adrenocortical Tumor". In this paper, we analyse 37 adrenocortical tumours (ACTs) by whole-genome, whole-exome and/or transcriptome sequencing. Illumina HiSeq 2000; 38
EGAD00001002680 This dataset contains RNA-Seq files for the SJACT cohort associated with the paper "Genetic landscape of pediatric Adrenocortical Tumor". In this paper, we analyse 37 adrenocortical tumours (ACTs) by whole-genome, whole-exome and/or transcriptome sequencing. Illumina HiSeq 2000;ILLUMINA 26
EGAD00001002692 DATA FILES FOR MULLIGHAN MEF2D RNASEQ STRANDED Illumina HiSeq 2000;ILLUMINA 200
EGAD00001002741 Additional Xenograph files for PCGP SJERG Illumina HiSeq 2000;ILLUMINA 11
EGAD00001002704 DATA FILES FOR MULLIGHAN MEF2D RNASEQ UNSTRANDED Illumina HiSeq 2000;ILLUMINA 217
EGAD00001003135 DATA FILES FOR GRUBER SJAMLM7 RNASEQ Illumina HiSeq 2000;ILLUMINA 86
EGAD00001003134 DATA FILES FOR GRUBER SJAMLM7 EXOME Illumina HiSeq 2000;ILLUMINA 114
EGAD00001001874 Illumina HiSeq 2000; 16
EGAD00001003155 WES files for SJMDS paper titled 'Genomic Landscape of Pediatric Myelodysplastic Syndromes' Illumina HiSeq 2000 (ILLUMINA) 6
EGAD00001002654 This dataset contains RNA-seq, ATAC-seq, and ChIP-seq samples from the SJERG cohort. We applied ChIP-Seq for Dux4 on two B-cell ALL cell-lines(REH, Nalm6) along with INPUT. ATAC-Seq on two B-cell ALL cell-lines(REH, Nalm6) and xenograft of a B-cell ALL patient(ERG000016). Illumina HiSeq 2000;ILLUMINA 13
EGAD00001003126 WGS data of medulloblastoma tumor/control pairs. 74
EGAD00010001300 Medulloblastoma expression profiling Affymetrix expression array 146
EGAD00001000085 Somatic Histone H3 mutations Illumina HiSeq 2000 14
EGAD00001002681 RNA-seq, ChIP-seq, and ATAC-seq files for PCGP SJERG paper titled "Deregulation of DUX4 and ERG in acute lymphoblastic leukemia" Illumina HiSeq 2000 (ILLUMINA) 53
EGAD00010001319 Medulloblastoma methylation profiling Illumina Infinium HumanMethylation450 BeadChip 345