St. Jude Children’s Research Hospital – Washington University Pediatric Cancer Genome Project Steering Committee

Contact Information

PCGP Steering Committee
pcgp_data_request@stjude.org

Request Access

This DAC controls 173 datasets

Dataset ID	Description	Technology	Samples
EGAD00001000085	Somatic Histone H3 mutations	Illumina HiSeq 2000	14
EGAD00001000135	Neuroblastoma whole genome sequencing	Illumina HiSeq 2000	80
EGAD00001000159	DATA FILES FOR SJOS	Illumina HiSeq 2000	37
EGAD00001000160	DATA FILES FOR SJACT	Illumina HiSeq 2000	16
EGAD00001000161	DATA FILES FOR SJLGG	Illumina HiSeq 2000	33
EGAD00001000162	DATA FILES FOR SJEPD	Illumina HiSeq 2000	44
EGAD00001000163	DATA FILES FOR SJPHALL	Illumina HiSeq 2000	18
EGAD00001000164	Whole Genome Sequencing accompanying Genetic landscape of pediatric Rhabdomyosarcoma.	Illumina HiSeq 2000	29
EGAD00001000165	DATA FILES FOR SJINF	Illumina HiSeq 2000	46
EGAD00001000259	DATA FILES FOR SJAMLM7	Illumina HiSeq 2000	8
EGAD00001000260	Hypodiploid acute lymphoblastic leukemia whole genome sequencing	Illumina HiSeq 2000	40
EGAD00001000261	Retinoblastoma whole genome sequencing	Illumina HiSeq 2000	8
EGAD00001000268	DATA FILES FOR SJCBF	Illumina HiSeq 2000	34
EGAD00001000269	OLD DATA FILES FOR SJMB - Superseded by EGAD00001001864	Illumina HiSeq 2000	68
EGAD00001000352	DATA FILES FOR SJLGG	Illumina HiSeq 2000	7
EGAD00001000353	DATA FILES FOR SJLGG	Illumina HiSeq 2000	45
EGAD00001000654	DATA FILES FOR BALL-PAX5	Illumina HiSeq 2000	153
EGAD00001000655	DATA FILES FOR Histone-NSD2_RNASeq	Illumina HiSeq 2000	8
EGAD00001000657	DATA FILES FOR Histone Capture bams	Illumina HiSeq 2000	962
EGAD00001000695	DATA FILES FOR SJLGG	Illumina HiSeq 2000	46
EGAD00001000806	Whole Genome Sequencing (WGS) for St. Jude High Grade Glioma (HGG) study	Illumina HiSeq 2000	63
EGAD00001000807	Whole Exome Sequencing (WES) for St. Jude High Grade Glioma (HGG) study	Illumina HiSeq 2000	148
EGAD00001000853	DATA FILES FOR SJEPD	Illumina HiSeq 2000	37
EGAD00001000854	DATA FILES FOR SJEPD	Illumina HiSeq 2000	77
EGAD00001000878	RNA-Seq files accompanying Genetic landscape of pediatric Rhabdomyosarcoma	Illumina HiSeq 2000	42
EGAD00001000976	WGS DATA FILES FOR SJPhLike	Illumina HiSeq 2000	80
EGAD00001001016	DATA FILES FOR SJPhLike-RNASeq	Illumina HiSeq 2000	125
EGAD00001001020	DATA FILES FOR SJEWS-WGS	Illumina HiSeq 2000	38
EGAD00001001032	DATA FILES FOR SJMEL-WGS	Illumina HiSeq 2000	12
EGAD00001001045	DATA FILES FOR SJRB	Illumina HiSeq 2000	20
EGAD00001001052	DATA FILES FOR SJTALL	Illumina HiSeq 2000	24
EGAD00001001053	DATA FILES FOR SJOS-WGS-2ndBatch	Illumina HiSeq 2000	27
EGAD00001001054	DATA FILES FOR Ph-likeALL WES	Illumina HiSeq 2000	23
EGAD00001001056	None	Illumina HiSeq 2000	7
EGAD00001001059	Whole Exome Sequencing files accompanying Genetic landscape of pediatric Rhabdomyosarcoma	Illumina HiSeq 2000	56
EGAD00001001065	DATA FILES FOR SJCPC-WGS	Illumina HiSeq 2000	8
EGAD00001001098	DATA FILES FOR SJINF RNASeq	Illumina HiSeq 2000	63
EGAD00001001245	DATA FILES FOR PCGP SJINF WES	Illumina HiSeq 2000	40
EGAD00001001246	DATA FILES FOR PCGP SJMEL WXS	Illumina HiSeq 2000	28
EGAD00001001247	DATA FILES FOR PCGP SJMEL RNASEQ	Illumina HiSeq 2000	7
EGAD00001001248	DATA FILES FOR PCGP SJETP WXS	Illumina HiSeq 2000	13
EGAD00001001352	Data files for CONSERTING (WGS)	Illumina HiSeq 2000	38
EGAD00001001415	DATA FILES FOR PCGP Dyer_iPSC WGS	Illumina HiSeq 2000	2
EGAD00001001416	DATA FILES FOR PCGP Dyer_iPSC TEBS	Illumina HiSeq 2000	18
EGAD00001001418	DATA FILES FOR PCGP Dyer_iPSC 5hmc	Illumina HiSeq 2000	8
EGAD00001001432	PCGP Germline Study Whole Genome Sequencing	Illumina HiSeq 2000	1337
EGAD00001001433	PCGP Germline Study Whole Exome Sequencing	Illumina HiSeq 2000	906
EGAD00001001664	LGG Epilepsy Cohort WGS	Illumina HiSeq 2000	18
EGAD00001001665	LGG Epilepsy Cohort WXS	Illumina HiSeq 2000	61
EGAD00001001666	LGG Epilepsy Cohort RNA-Seq	Illumina HiSeq 2000	34
EGAD00001001864	DATA FILES FOR PCGP MB WGS - Supersedes (EGAD00001000269)	Illumina HiSeq 2000	76
EGAD00001001874	None	Illumina HiSeq 2000	16
EGAD00001002530	Additional files for "The Genomic Landscape of Core-Binding Factor Acute Myeloid Leukemias" (EGAS00001000349). This dataset includes the processed RNASeq data referenced in this paper.	Illumina HiSeq 2000	36
EGAD00001002654	This dataset contains RNA-seq, ATAC-seq, and ChIP-seq samples from the SJERG cohort. We applied ChIP-Seq for Dux4 on two B-cell ALL cell-lines(REH, Nalm6) along with INPUT. ATAC-Seq on two B-cell ALL cell-lines(REH, Nalm6) and xenograft of a B-cell ALL patient(ERG000016).	Illumina HiSeq 2000	13
EGAD00001002667	Additional files for "The Genomic Landscape of Core-Binding Factor Acute Myeloid Leukemias" (EGAS00001000349). This dataset includes the processed Excap data referenced in this paper.	Illumina HiSeq 2000	327
EGAD00001002676	DATA FILES FOR PCGP SJERG (WGS)	Illumina HiSeq 2000	44
EGAD00001002677	DATA FILES FOR PCGP SJERG (WXS)	Illumina HiSeq 2000	42
EGAD00001002679	This dataset contains WES files for the SJACT cohort associated with the paper "Genetic landscape of pediatric Adrenocortical Tumor". In this paper, we analyse 37 adrenocortical tumours (ACTs) by whole-genome, whole-exome and/or transcriptome sequencing.	Illumina HiSeq 2000	38
EGAD00001002680	This dataset contains RNA-Seq files for the SJACT cohort associated with the paper "Genetic landscape of pediatric Adrenocortical Tumor". In this paper, we analyse 37 adrenocortical tumours (ACTs) by whole-genome, whole-exome and/or transcriptome sequencing.	Illumina HiSeq 2000	26
EGAD00001002681	RNA-seq, ChIP-seq, and ATAC-seq files for PCGP SJERG paper titled "Deregulation of DUX4 and ERG in acute lymphoblastic leukemia"	Illumina HiSeq 2000 (ILLUMINA)	53
EGAD00001002692	DATA FILES FOR MULLIGHAN MEF2D RNASEQ STRANDED	Illumina HiSeq 2000	200
EGAD00001002704	DATA FILES FOR MULLIGHAN MEF2D RNASEQ UNSTRANDED	Illumina HiSeq 2000	217
EGAD00001002741	Additional Xenograph files for PCGP SJERG	Illumina HiSeq 2000	11
EGAD00001003126	WGS data of medulloblastoma tumor/control pairs.		74
EGAD00001003134	DATA FILES FOR GRUBER SJAMLM7 EXOME	Illumina HiSeq 2000	114
EGAD00001003135	DATA FILES FOR GRUBER SJAMLM7 RNASEQ	Illumina HiSeq 2000	86
EGAD00001003154	RNA-Seq files for SJOS study	Illumina HiSeq 2000	14
EGAD00001003155	WES files for SJMDS paper titled 'Genomic Landscape of Pediatric Myelodysplastic Syndromes'	Illumina HiSeq 2000	6
EGAD00001003156	WGS files for SJMDS paper titled 'Genomic Landscape of Pediatric Myelodysplastic Syndromes'	Illumina HiSeq 2000	4
EGAD00001003389	WGS and WXS files for Dyer ATRX study	Illumina HiSeq 2000	6
EGAD00001003396	WGS minibam files for SJLIFE	Illumina HiSeq 2000	3036
EGAD00001003412	None	Illumina HiSeq 2000	152
EGAD00001003413	None	Illumina HiSeq 2000	145
EGAD00001003432	ChIP-Seq data for the paper titled "Orthotopic Patient-Derived Xenografts of Pediatric Solid Tumors"	Illumina HiSeq 2000	20
EGAD00001003433	RNA-Seq data for the paper titled "Orthotopic Patient-Derived Xenografts of Pediatric Solid Tumors"	Illumina HiSeq 2000	98
EGAD00001003434	Whole Exome Sequencing for the paper titled "Orthotopic Patient-Derived Xenografts of Pediatric Solid Tumors"	Illumina HiSeq 2000	149
EGAD00001003435	Whole Genome Sequencing for the paper titled "Orthotopic Patient-Derived Xenografts of Pediatric Solid Tumors"	Illumina HiSeq 2000	150
EGAD00001003781	Paired whole exome sequencing for 32 primary MDS, 14 MDS/MPN, and 8 AML-MRC cases (total = 54). Normal comparator genomic DNA was extracted from lymphocytes purified by flow cytometry. Bulk myeloid cells were used as a source of tumor gDNA. Files uploaded are mapped BAM files.	Illumina HiSeq 2000	94
EGAD00001003782	When available (25 primary MDS, 12 MDS/MPN, and 6 AML-MRC cases), high quality RNA (stranded-total) was submitted for RNA-seq. RNA was extracted from bulk myeloid cells which was used as the tumor population. Files uploaded are mapped BAM files.	Illumina HiSeq 2000	43
EGAD00001003905	RNA-Seq files accompanying the paper titled "Somatic Histone H3 Mutations in Diffuse Intrinsic Pontine Gliomas and Non-Brainstem Paediatric Glioblastomas".	Illumina HiSeq 2000	66
EGAD00001004280	This dataset contains whole genome sequencing BAM files for 78 tumor-normal pairs (a total of 156 samples) used in the St. Jude Clinical Pilot. Mapping was performed using BWA. This dataset accompanies the paper "Clinical Cancer Genomic Profiling by Three-Platform Sequencing of Whole Genome, Whole Exome and Transcriptome"	Illumina HiSeq 2000	78
EGAD00001004287	This dataset contains whole exome sequencing BAM files for 78 tumor-normal pairs (a total of 156 samples) used in the St. Jude Clinical Pilot. Mapping was performed using BWA. This dataset accompanies the paper "Clinical Cancer Genomic Profiling by Three-Platform Sequencing of Whole Genome, Whole Exome and Transcriptome"	Illumina HiSeq 2000	156
EGAD00001004290	This dataset contains whole genome sequencing BAM files for 78 tumor-normal pairs (a total of 156 samples) used in the St. Jude Clinical Pilot. Mapping was performed using BWA. This dataset accompanies the paper "Clinical Cancer Genomic Profiling by Three-Platform Sequencing of Whole Genome, Whole Exome and Transcriptome"	Illumina HiSeq 2000	156
EGAD00001004312	ChIP-Seq files accompanying the paper titled "Identification of Therapeutic Targets in Rhabdomyosarcoma Through Integrated Genomic, Epigenomic, and Proteomic Analyses".	Illumina HiSeq 2000	158
EGAD00001004315	WGBS files accompanying the paper titled "Identification of Therapeutic Targets in Rhabdomyosarcoma Through Integrated Genomic, Epigenomic, and Proteomic Analyses".	Illumina HiSeq 2000	37
EGAD00001004337	Whole Genome Sequencing files accompanying the paper titled "Structure and evolution of double minutes in diagnosis and relapse brain tumors". Please read the paper for more details.	Illumina HiSeq 2000	2
EGAD00001004429	ChIP-Seq files for PCGP ATRX study paper titled "MYCN Amplification and ATRX Mutations are Incompatible in Neuroblastoma"	Illumina HiSeq 2000	121
EGAD00001004446	WGS files for Mullighan PAX5_B-ALL paper titled "PAX5-driven Subtypes of B-cell Acute Lymphoblastic Leukemia"	Illumina HiSeq 2000	16
EGAD00001004447	WES files for Mullighan PAX5_B-ALL paper titled "PAX5-driven Subtypes of B-cell Acute Lymphoblastic Leukemia"	Illumina HiSeq 2000	128
EGAD00001004461	RNAseq files (dataset 1 of 2) for Mullighan PAX5_B-ALL paper titled "PAX5-driven Subtypes of B-cell Acute Lymphoblastic Leukemia"	Illumina HiSeq 2000	1083
EGAD00001004463	RNAseq files (dataset 2 of 2) for Mullighan PAX5_B-ALL paper titled "PAX5-driven Subtypes of B-cell Acute Lymphoblastic Leukemia"	Illumina HiSeq 2000	204
EGAD00001004506	WES files for CHEN WTPDX paper titled "Forty-Five patient-derived xenografts capture the clinical and biological heterogeneity of Wilms tumor"	Illumina HiSeq 2000	107
EGAD00001004507	RNAseq files for CHEN WTPDX RNASEQ paper titled "Forty-Five patient-derived xenografts capture the clinical and biological heterogeneity of Wilms tumor"	Illumina HiSeq 2000	88
EGAD00001004559	WGBS files for PCGP NBL_MYCN_ATRX paper titled "MYCN Amplification and ATRX Mutations are Incompatible in Neuroblastoma"	Illumina HiSeq 2000	24
EGAD00001004566	WES files for Newman MAP3K8 melanoma paper titled "Clinical genome sequencing uncovers potentially targetable truncations and fusions of MAP3K8 in spitzoid and other melanomas"	Illumina HiSeq 2000	2
EGAD00001004567	RNASeq files for MAP3K8 melanoma paper titled "Clinical genome sequencing uncovers potentially targetable truncations and fusions of MAP3K8 in spitzoid and other melanomas"	Illumina HiSeq 2000	2
EGAD00001004579	WGS files for Newman MAP3K8 melanoma paper titled "Clinical genome sequencing uncovers potentially targetable truncations and fusions of MAP3K8 in spitzoid and other melanomas"	Illumina HiSeq 2000	2
EGAD00001004595	VALCAP files for Ma et al. (2019) Genome Biology (accepted) titled “Analysis of error profiles in deep next-generation sequencing data"	HiSeq X Ten	47
EGAD00001005484	WXS files for Zhang PanNBL paper titled "Pan-neuroblastoma analysis reveals age- and signature-associated driver alterations"	Illumina HiSeq 2000	634
EGAD00001005506	WGS files for Mullighan_GL_reALL paper titled "Mutational landscape and patterns of clonal evolution in relapsed pediatric acute lymphoblastic leukemia"	Illumina HiSeq 2000	99
EGAD00001005509	WXS files for Mullighan_GL_reALL paper titled "Mutational landscape and patterns of clonal evolution in relapsed pediatric acute lymphoblastic leukemia"	Illumina HiSeq 2000	276
EGAD00001005510	RNAseq files for Mullighan_GL_reALL RNASEQ2 paper titled "Mutational landscape and patterns of clonal evolution in relapsed pediatric acute lymphoblastic leukemia"	Illumina HiSeq 2000	34
EGAD00001005511	RNASeq files for Mullighan_GL_reALL RNASEQ1 paper titled "Mutational landscape and patterns of clonal evolution in relapsed pediatric acute lymphoblastic leukemia"	Illumina HiSeq 2000	81
EGAD00001005729	WGS files for Mullighan BiTE WGS paper titled "Tumor intrinsic and extrinsic mechanisms of response and resistance to blinatumomab in relapsed/refractory acute lymphoblastic leukemia"	Illumina HiSeq 2000	56
EGAD00001005730	WXS files for Mullighan BiTE WXS paper titled "Tumor intrinsic and extrinsic mechanisms of response and resistance to blinatumomab in relapsed/refractory acute lymphoblastic leukemia"	Illumina HiSeq 2000	60
EGAD00001005731	RNAseq files for Mullighan BiTE RNASEQ1 paper titled "Tumor intrinsic and extrinsic mechanisms of response and resistance to blinatumomab in relapsed/refractory acute lymphoblastic leukemia"	Illumina HiSeq 2000	41
EGAD00001005732	lowinput RNASEQ files for Mullighan BiTE RNASEQ2 paper titled "Tumor intrinsic and extrinsic mechanisms of response and resistance to blinatumomab in relapsed/refractory acute lymphoblastic leukemia"	Illumina HiSeq 2000	10
EGAD00001005733	single cell RNASEQ files for Mullighan BiTE RNASEQ3 paper titled "Tumor intrinsic and extrinsic mechanisms of response and resistance to blinatumomab in relapsed/refractory acute lymphoblastic leukemia"	Illumina HiSeq 2000	10
EGAD00001005936	WXS files for Mullighan Leventaki ALCL paper titled "Integrative molecular analysis of pediatric Anaplastic large cell lymphoma reveals subtypes with distinct immune suppression signatures."	Illumina HiSeq 2000	42
EGAD00001005951	RNASeq files for Mullighan Leventaki ALCL Project paper titled "Integrative molecular analysis of pediatric Anaplastic large cell lymphoma reveals subtypes with distinct immune suppression signatures."	Illumina HiSeq 2000	32
EGAD00001006196	Additional Neuroblastoma whole genome sequencing data	Illumina HiSeq 2000	3
EGAD00001006344	Additional Neuroblastoma whole genome sequencing data		30
EGAD00001006380	RNASeq files for paper titled "Molecular classification improves risk assessment in adult B-lineage ALL: Patients on the international UKALLXII-ECOG2993 trial."	Illumina HiSeq 2000	57
EGAD00001006398	ChIP-Seq files accompanying the paper titled "Identification of Therapeutic Targets in Rhabdomyosarcoma Through Integrated Genomic, Epigenomic, and Proteomic Analyses".	Illumina HiSeq 2000	242
EGAD00001006442	WGS files for paper titled "Integrative Analysis of Pediatric Acute Leukemia Identifies Acute Myeloid/T-Lymphoblastic Leukemia Subtype that Spans a T Lineage and Myeloid Continuum with Distinct Prognoses"	Illumina HiSeq 2000	184
EGAD00001006443	WXS files for paper titled "Integrative Analysis of Pediatric Acute Leukemia Identifies Acute Myeloid/T-Lymphoblastic Leukemia Subtype that Spans a T Lineage and Myeloid Continuum with Distinct Prognoses"	Illumina HiSeq 2000	260
EGAD00001006444	RNASeq files for paper titled "Integrative Analysis of Pediatric Acute Leukemia Identifies Acute Myeloid/T-Lymphoblastic Leukemia Subtype that Spans a T Lineage and Myeloid Continuum with Distinct Prognoses"	Illumina HiSeq 2000	132
EGAD00001006609	RNASeq files for paper titled "Prognostic and therapeutic significance of leukemia subtypes and minimal residual disease measurements in pediatric acute lymphoblastic leukemia treated with contemporary risk-directed trial: a cohort study"	Illumina HiSeq 2000 Illumina NovaSeq 6000	122
EGAD00001006674	RNASeq files for paper titled "The Acquisition of Molecular Drivers in Pediatric Therapy-Related Myeloid Neoplasms"	Illumina HiSeq 2000	56
EGAD00001006675	WXS files for paper titled "The Acquisition of Molecular Drivers in Pediatric Therapy-Related Myeloid Neoplasms"	Illumina HiSeq 2000	137
EGAD00001006676	WGS files for paper titled "The Acquisition of Molecular Drivers in Pediatric Therapy-Related Myeloid Neoplasms"	Illumina HiSeq 2000	35
EGAD00001006678	HiC files for GenomePaint paper titled "Exploration of coding and non-coding variants in cancer using GenomePaint."	Illumina HiSeq 2000	8
EGAD00001006679	WGS files for GenomePaint paper titled "Exploration of coding and non-coding variants in cancer using GenomePaint."	Illumina HiSeq 2000	1
EGAD00001006680	RNASeq files for GenomePaint paper titled "Exploration of coding and non-coding variants in cancer using GenomePaint."	Illumina HiSeq 2000	1
EGAD00001006905	Whole genome sequencing of 29 samples	Illumina NovaSeq 6000	29
EGAD00001006954	iAMP21 WGS, total of 224 samples	HiSeq X Ten Illumina HiSeq 2500 Illumina NovaSeq 6000	224
EGAD00001007530	RNAseq data of total TXVI samples	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000 Illumina NovaSeq 6000 NextSeq 550	227
EGAD00001007570	WGS data set of 11 xenograft samples, Degradation of Janus kinases in CRLF2-rearranged acute lymphoblastic leukemia	Illumina NovaSeq 6000	11
EGAD00001007577	RNAseq samples from the iAMP21 study	Illumina HiSeq 2500 Illumina HiSeq 4000 NextSeq 550	88
EGAD00001007670	RNAseq data set of BCL11B, 519 samples	Illumina HiSeq 2500 Illumina HiSeq 4000 Illumina NovaSeq 6000 NextSeq 550	506
EGAD00001007863	BCL11B PacBio data set, 4 samples	Sequel	4
EGAD00001007966	WGS data set used in the study, 2 samples	Illumina HiSeq 2500	2
EGAD00001007967	RNAseq data set used in the study, 10 samples	Illumina HiSeq 2500	10
EGAD00001007968	WGBS data set used in the study, 96 samples	Illumina HiSeq 2000 Illumina NovaSeq 6000	96
EGAD00001008134	RNAseq data set, panALL study, 16 samples	Illumina HiSeq 2500 Illumina NovaSeq 6000	16
EGAD00001008193	Exome sequencing of panALL exome data set, total of 1948 samples	Illumina HiSeq 2500	598
EGAD00001008268	panALL exome sequencing, data set2, 700 samples	Illumina HiSeq 2500	700
EGAD00001008290	panALL exome data set3, 650 samples	Illumina HiSeq 2500	650
EGAD00001008407	RNAseq files for Klco RPAML study titled "Genomics of pediatric myeloid neoplasms"	Illumina HiSeq 2000	173
EGAD00001008413	WGS files for Klco RPAML study titled "Genomics of pediatric myeloid neoplasms"	Illumina HiSeq 2000	158
EGAD00001008446	Remaining WGS files for study titled "Genomics of pediatric myeloid neoplasms"	Illumina HiSeq 2000	10
EGAD00001008600	WGS files for Genomic Landscape ALL paper titled "The genomic landscape of pediatric acute lymphoblastic leukemia"	Illumina HiSeq 2000	278
EGAD00001008824	RNASeq files for Roussel-MPBRG paper titled "Combination of ribociclib and gemcitabine for the treatment of medulloblastoma"	Illumina HiSeq 2000	98
EGAD00001008842	RNASeq files for Roussel paper titled "Combination of CDK4/6 with BET-bromodomain and PI3K/mTOR inhibitors in medulloblastoma in vitro and in vivo"	Illumina HiSeq 2000	39
EGAD00001009163	WGS files for Roussel-ATRT-TM paper titled "Atypical teratoid/ rhabdoid tumoroids reveal subgroup-specific drug vulnerabilities"	Illumina HiSeq 2000	8
EGAD00001009164	WXS files for Roussel-ATRT-TM paper titled "Atypical teratoid/ rhabdoid tumoroids reveal subgroup-specific drug vulnerabilities"	Illumina HiSeq 2000	8
EGAD00001009302	RNASeq files for Roussel-ATRT-TM paper titled "Atypical teratoid/ rhabdoid tumoroids reveal subgroup-specific drug vulnerabilities"	Illumina HiSeq 2000	8
EGAD00001009394	Additional RNASeq files for Roussel paper titled "Combination of CDK4/6 with BET-bromodomain and PI3K/mTOR inhibitors in medulloblastoma in vitro and in vivo"	Illumina HiSeq 2000	19
EGAD00001009787	WGS files for CIC paper titled "Malignant progression of an ancestral bone marrow clone harboring a CIC-NUTM2A fusion in isolated myeloid sarcoma"	Illumina HiSeq 2000	3
EGAD00001009788	RNASeq files for CIC paper titled "Malignant progression of an ancestral bone marrow clone harboring a CIC-NUTM2A fusion in isolated myeloid sarcoma"	Illumina HiSeq 2000	2
EGAD00001010264	Additional WGS files for Roussel-ATRT-TM paper titled "Atypical teratoid/ rhabdoid tumoroids reveal subgroup-specific drug vulnerabilities"	Illumina HiSeq 2000	3
EGAD00001010265	Additional WXS files for Roussel-ATRT-TM paper titled "Atypical teratoid/ rhabdoid tumoroids reveal subgroup-specific drug vulnerabilities"	Illumina HiSeq 2000	2
EGAD00001010270	Additional WGS files for Genomic Landscape ALL paper titled "The genomic landscape of pediatric acute lymphoblastic leukemia"	Illumina HiSeq 2000	2
EGAD00001011294	RNASeq files for paper titled "Proposal of a new genomic framework for categorization of pediatric acute myeloid leukemia associated with prognosis"	Illumina HiSeq 2000	307
EGAD00001011295	WGS files for paper titled "Proposal of a new genomic framework for categorization of pediatric acute myeloid leukemia associated with prognosis"	Illumina HiSeq 2000	264
EGAD00001011296	WXS files for paper titled "Proposal of a new genomic framework for categorization of pediatric acute myeloid leukemia associated with prognosis"	Illumina HiSeq 2000	215
EGAD00001015356	This data set includes 27 full-length transcript sequence generated from PacBio IsoSeq that were used for verify the cancer-specific exons identified in three genes: FN1, COL6A3 and TNC. The data were generated from PDX models of osteosarcoma patients.	PacBio RS	1
EGAD00010000462	SJLGG Case samples using Gene Expression Array	Affymetrix_U133v2	75
EGAD00010000596	PCGP Ph-likeALL GEA		837
EGAD00010000598	PCGP Ph-likeALL SNP6		1724
EGAD00010000696	PCGP ETP ALL SNP6		-
EGAD00010000698	PCGP INF ALL SNP6		-
EGAD00010001300	Medulloblastoma expression profiling	Affymetrix expression array	146
EGAD00010001319	Medulloblastoma methylation profiling	Illumina Infinium HumanMethylation450 BeadChip	345
EGAD00010001596	DNA methylation data from patient RMS tumor samples from Illumina 450 K arays	Illlimuna EPIC 450 K	32
EGAD00010001635	Over 1.87 million SNP and CNV loci are screened by Affymetrix SNP 6.0 array		415
EGAD00010001636	Over 2.5 million SNP and CNV loci are screened by Illumina Infinium Omni2.5Exome-8 Kit		196
EGAD00010001637	Over 1.87 million SNP and CNV loci are screened by Affymetrix SNP 6.0 array		539
EGAD00010001638	Over 2.5 million SNP and CNV loci are screened by Illumina Infinium Omni2.5Exome-8 Kit		262
EGAD00010001813	Over 1.87 million SNP and CNV loci are screened by Affymetrix SNP 6.0 array	Affymetrix SNP 6.0 array	91
EGAD00010001814	Over 1.87 million SNP and CNV loci are screened by Affymetrix SNP 6.0 array	Affymetrix SNP 6.0 array	195
EGAD00010002357	Methylation files for Roussel-ATRT-TM paper titled "Atypical teratoid/ rhabdoid tumoroids reveal subgroup-specific drug vulnerabilities"	Illumina Infinium MethylationEPIC	12
EGAD00010002495	Additional Methylation files for Roussel-ATRT-TM paper titled "Atypical teratoid/ rhabdoid tumoroids reveal subgroup-specific drug vulnerabilities"	Illumina Infinium MethylationEPIC	3