| EGAD00001000085 |
Somatic Histone H3 mutations |
Illumina HiSeq 2000 |
14 |
| EGAD00001000135 |
Neuroblastoma whole genome sequencing |
Illumina HiSeq 2000 |
80 |
| EGAD00001000159 |
DATA FILES FOR SJOS |
Illumina HiSeq 2000 |
37 |
| EGAD00001000160 |
DATA FILES FOR SJACT |
Illumina HiSeq 2000 |
16 |
| EGAD00001000161 |
DATA FILES FOR SJLGG |
Illumina HiSeq 2000 |
33 |
| EGAD00001000162 |
DATA FILES FOR SJEPD |
Illumina HiSeq 2000 |
44 |
| EGAD00001000163 |
DATA FILES FOR SJPHALL |
Illumina HiSeq 2000 |
18 |
| EGAD00001000164 |
Whole Genome Sequencing accompanying Genetic landscape of pediatric Rhabdomyosarcoma. |
Illumina HiSeq 2000 |
29 |
| EGAD00001000165 |
DATA FILES FOR SJINF |
Illumina HiSeq 2000 |
46 |
| EGAD00001000259 |
DATA FILES FOR SJAMLM7 |
Illumina HiSeq 2000 |
8 |
| EGAD00001000260 |
Hypodiploid acute lymphoblastic leukemia whole genome sequencing |
Illumina HiSeq 2000 |
40 |
| EGAD00001000261 |
Retinoblastoma whole genome sequencing |
Illumina HiSeq 2000 |
8 |
| EGAD00001000268 |
DATA FILES FOR SJCBF |
Illumina HiSeq 2000 |
34 |
| EGAD00001000269 |
OLD DATA FILES FOR SJMB - Superseded by EGAD00001001864 |
Illumina HiSeq 2000 |
68 |
| EGAD00001000352 |
DATA FILES FOR SJLGG |
Illumina HiSeq 2000 |
7 |
| EGAD00001000353 |
DATA FILES FOR SJLGG |
Illumina HiSeq 2000 |
45 |
| EGAD00001000654 |
DATA FILES FOR BALL-PAX5 |
Illumina HiSeq 2000 |
153 |
| EGAD00001000655 |
DATA FILES FOR Histone-NSD2_RNASeq |
Illumina HiSeq 2000 |
8 |
| EGAD00001000657 |
DATA FILES FOR Histone Capture bams |
Illumina HiSeq 2000 |
962 |
| EGAD00001000695 |
DATA FILES FOR SJLGG |
Illumina HiSeq 2000 |
46 |
| EGAD00001000806 |
Whole Genome Sequencing (WGS) for St. Jude High Grade Glioma (HGG) study |
Illumina HiSeq 2000 |
63 |
| EGAD00001000807 |
Whole Exome Sequencing (WES) for St. Jude High Grade Glioma (HGG) study |
Illumina HiSeq 2000 |
148 |
| EGAD00001000853 |
DATA FILES FOR SJEPD |
Illumina HiSeq 2000 |
37 |
| EGAD00001000854 |
DATA FILES FOR SJEPD |
Illumina HiSeq 2000 |
77 |
| EGAD00001000878 |
RNA-Seq files accompanying Genetic landscape of pediatric Rhabdomyosarcoma |
Illumina HiSeq 2000 |
42 |
| EGAD00001000976 |
WGS DATA FILES FOR SJPhLike |
Illumina HiSeq 2000 |
80 |
| EGAD00001001016 |
DATA FILES FOR SJPhLike-RNASeq |
Illumina HiSeq 2000 |
125 |
| EGAD00001001020 |
DATA FILES FOR SJEWS-WGS |
Illumina HiSeq 2000 |
38 |
| EGAD00001001032 |
DATA FILES FOR SJMEL-WGS |
Illumina HiSeq 2000 |
12 |
| EGAD00001001045 |
DATA FILES FOR SJRB |
Illumina HiSeq 2000 |
20 |
| EGAD00001001052 |
DATA FILES FOR SJTALL |
Illumina HiSeq 2000 |
24 |
| EGAD00001001053 |
DATA FILES FOR SJOS-WGS-2ndBatch |
Illumina HiSeq 2000 |
27 |
| EGAD00001001054 |
DATA FILES FOR Ph-likeALL WES |
Illumina HiSeq 2000 |
23 |
| EGAD00001001056 |
NA |
Illumina HiSeq 2000 |
7 |
| EGAD00001001059 |
Whole Exome Sequencing files accompanying Genetic landscape of pediatric Rhabdomyosarcoma |
Illumina HiSeq 2000 |
56 |
| EGAD00001001065 |
DATA FILES FOR SJCPC-WGS |
Illumina HiSeq 2000 |
8 |
| EGAD00001001098 |
DATA FILES FOR SJINF RNASeq |
Illumina HiSeq 2000 |
63 |
| EGAD00001001245 |
DATA FILES FOR PCGP SJINF WES |
Illumina HiSeq 2000 |
40 |
| EGAD00001001246 |
DATA FILES FOR PCGP SJMEL WXS |
Illumina HiSeq 2000 |
28 |
| EGAD00001001247 |
DATA FILES FOR PCGP SJMEL RNASEQ |
Illumina HiSeq 2000 |
7 |
| EGAD00001001248 |
DATA FILES FOR PCGP SJETP WXS |
Illumina HiSeq 2000 |
13 |
| EGAD00001001352 |
Data files for CONSERTING (WGS) |
Illumina HiSeq 2000 |
38 |
| EGAD00001001415 |
DATA FILES FOR PCGP Dyer_iPSC WGS |
Illumina HiSeq 2000 |
2 |
| EGAD00001001416 |
DATA FILES FOR PCGP Dyer_iPSC TEBS |
Illumina HiSeq 2000 |
18 |
| EGAD00001001418 |
DATA FILES FOR PCGP Dyer_iPSC 5hmc |
Illumina HiSeq 2000 |
8 |
| EGAD00001001432 |
PCGP Germline Study Whole Genome Sequencing |
Illumina HiSeq 2000 |
1337 |
| EGAD00001001433 |
PCGP Germline Study Whole Exome Sequencing |
Illumina HiSeq 2000 |
906 |
| EGAD00001001664 |
LGG Epilepsy Cohort WGS |
Illumina HiSeq 2000 |
18 |
| EGAD00001001665 |
LGG Epilepsy Cohort WXS |
Illumina HiSeq 2000 |
61 |
| EGAD00001001666 |
LGG Epilepsy Cohort RNA-Seq |
Illumina HiSeq 2000 |
34 |
| EGAD00001001864 |
DATA FILES FOR PCGP MB WGS - Supersedes (EGAD00001000269) |
Illumina HiSeq 2000 |
76 |
| EGAD00001001874 |
NA |
Illumina HiSeq 2000 |
16 |
| EGAD00001002530 |
Additional files for "The Genomic Landscape of Core-Binding Factor Acute Myeloid Leukemias" (EGAS00001000349). This dataset includes the processed RNASeq data referenced in this paper. |
Illumina HiSeq 2000 |
36 |
| EGAD00001002654 |
This dataset contains RNA-seq, ATAC-seq, and ChIP-seq samples from the SJERG cohort. We applied ChIP-Seq for Dux4 on two B-cell ALL cell-lines(REH, Nalm6) along with INPUT. ATAC-Seq on two B-cell ALL cell-lines(REH, Nalm6) and xenograft of a B-cell ALL patient(ERG000016). |
Illumina HiSeq 2000 |
13 |
| EGAD00001002667 |
Additional files for "The Genomic Landscape of Core-Binding Factor Acute Myeloid Leukemias" (EGAS00001000349). This dataset includes the processed Excap data referenced in this paper. |
Illumina HiSeq 2000 |
327 |
| EGAD00001002676 |
DATA FILES FOR PCGP SJERG (WGS) |
Illumina HiSeq 2000 |
44 |
| EGAD00001002677 |
DATA FILES FOR PCGP SJERG (WXS) |
Illumina HiSeq 2000 |
42 |
| EGAD00001002679 |
This dataset contains WES files for the SJACT cohort associated with the paper "Genetic landscape of pediatric Adrenocortical Tumor". In this paper, we analyse 37 adrenocortical tumours (ACTs) by whole-genome, whole-exome and/or transcriptome sequencing. |
Illumina HiSeq 2000 |
38 |
| EGAD00001002680 |
This dataset contains RNA-Seq files for the SJACT cohort associated with the paper "Genetic landscape of pediatric Adrenocortical Tumor". In this paper, we analyse 37 adrenocortical tumours (ACTs) by whole-genome, whole-exome and/or transcriptome sequencing. |
Illumina HiSeq 2000 |
26 |
| EGAD00001002681 |
RNA-seq, ChIP-seq, and ATAC-seq files for PCGP SJERG paper titled "Deregulation of DUX4 and ERG in acute lymphoblastic leukemia" |
Illumina HiSeq 2000 (ILLUMINA) |
53 |
| EGAD00001002692 |
DATA FILES FOR MULLIGHAN MEF2D RNASEQ STRANDED |
Illumina HiSeq 2000 |
200 |
| EGAD00001002704 |
DATA FILES FOR MULLIGHAN MEF2D RNASEQ UNSTRANDED |
Illumina HiSeq 2000 |
217 |
| EGAD00001002741 |
Additional Xenograph files for PCGP SJERG |
Illumina HiSeq 2000 |
11 |
| EGAD00001003126 |
WGS data of medulloblastoma tumor/control pairs. |
|
74 |
| EGAD00001003134 |
DATA FILES FOR GRUBER SJAMLM7 EXOME |
Illumina HiSeq 2000 |
114 |
| EGAD00001003135 |
DATA FILES FOR GRUBER SJAMLM7 RNASEQ |
Illumina HiSeq 2000 |
86 |
| EGAD00001003154 |
RNA-Seq files for SJOS study |
Illumina HiSeq 2000 |
14 |
| EGAD00001003155 |
WES files for SJMDS paper titled 'Genomic Landscape of Pediatric Myelodysplastic Syndromes' |
Illumina HiSeq 2000 |
6 |
| EGAD00001003156 |
WGS files for SJMDS paper titled 'Genomic Landscape of Pediatric Myelodysplastic Syndromes' |
Illumina HiSeq 2000 |
4 |
| EGAD00001003389 |
WGS and WXS files for Dyer ATRX study |
Illumina HiSeq 2000 |
6 |
| EGAD00001003396 |
WGS minibam files for SJLIFE |
Illumina HiSeq 2000 |
3036 |
| EGAD00001003412 |
NA |
Illumina HiSeq 2000 |
152 |
| EGAD00001003413 |
NA |
Illumina HiSeq 2000 |
145 |
| EGAD00001003432 |
ChIP-Seq data for the paper titled "Orthotopic Patient-Derived Xenografts of Pediatric Solid Tumors" |
Illumina HiSeq 2000 |
20 |
| EGAD00001003433 |
RNA-Seq data for the paper titled "Orthotopic Patient-Derived Xenografts of Pediatric Solid Tumors" |
Illumina HiSeq 2000 |
98 |
| EGAD00001003434 |
Whole Exome Sequencing for the paper titled "Orthotopic Patient-Derived Xenografts of Pediatric Solid Tumors" |
Illumina HiSeq 2000 |
149 |
| EGAD00001003435 |
Whole Genome Sequencing for the paper titled "Orthotopic Patient-Derived Xenografts of Pediatric Solid Tumors" |
Illumina HiSeq 2000 |
150 |
| EGAD00001003781 |
Paired whole exome sequencing for 32 primary MDS, 14 MDS/MPN, and 8 AML-MRC cases (total = 54). Normal comparator genomic DNA was extracted from lymphocytes purified by flow cytometry. Bulk myeloid cells were used as a source of tumor gDNA. Files uploaded are mapped BAM files. |
Illumina HiSeq 2000 |
94 |
| EGAD00001003782 |
When available (25 primary MDS, 12 MDS/MPN, and 6 AML-MRC cases), high quality RNA (stranded-total) was submitted for RNA-seq. RNA was extracted from bulk myeloid cells which was used as the tumor population. Files uploaded are mapped BAM files. |
Illumina HiSeq 2000 |
43 |
| EGAD00001003905 |
RNA-Seq files accompanying the paper titled "Somatic Histone H3 Mutations in Diffuse Intrinsic Pontine Gliomas and Non-Brainstem Paediatric Glioblastomas". |
Illumina HiSeq 2000 |
66 |
| EGAD00001004280 |
This dataset contains whole genome sequencing BAM files for 78 tumor-normal pairs (a total of 156 samples) used in the St. Jude Clinical Pilot. Mapping was performed using BWA. This dataset accompanies the paper "Clinical Cancer Genomic Profiling by Three-Platform Sequencing of Whole Genome, Whole Exome and Transcriptome" |
Illumina HiSeq 2000 |
78 |
| EGAD00001004287 |
This dataset contains whole exome sequencing BAM files for 78 tumor-normal pairs (a total of 156 samples) used in the St. Jude Clinical Pilot. Mapping was performed using BWA. This dataset accompanies the paper "Clinical Cancer Genomic Profiling by Three-Platform Sequencing of Whole Genome, Whole Exome and Transcriptome" |
Illumina HiSeq 2000 |
156 |
| EGAD00001004290 |
This dataset contains whole genome sequencing BAM files for 78 tumor-normal pairs (a total of 156 samples) used in the St. Jude Clinical Pilot. Mapping was performed using BWA. This dataset accompanies the paper "Clinical Cancer Genomic Profiling by Three-Platform Sequencing of Whole Genome, Whole Exome and Transcriptome" |
Illumina HiSeq 2000 |
156 |
| EGAD00001004312 |
ChIP-Seq files accompanying the paper titled "Identification of Therapeutic Targets in Rhabdomyosarcoma Through Integrated Genomic, Epigenomic, and Proteomic Analyses". |
Illumina HiSeq 2000 |
158 |
| EGAD00001004315 |
WGBS files accompanying the paper titled "Identification of Therapeutic Targets in Rhabdomyosarcoma Through Integrated Genomic, Epigenomic, and Proteomic Analyses". |
Illumina HiSeq 2000 |
37 |
| EGAD00001004337 |
Whole Genome Sequencing files accompanying the paper titled "Structure and evolution of double minutes in diagnosis and relapse brain tumors". Please read the paper for more details. |
Illumina HiSeq 2000 |
2 |
| EGAD00001004429 |
ChIP-Seq files for PCGP ATRX study paper titled "MYCN Amplification and ATRX Mutations are Incompatible in Neuroblastoma" |
Illumina HiSeq 2000 |
121 |
| EGAD00001004446 |
WGS files for Mullighan PAX5_B-ALL paper titled "PAX5-driven Subtypes of B-cell Acute Lymphoblastic Leukemia" |
Illumina HiSeq 2000 |
16 |
| EGAD00001004447 |
WES files for Mullighan PAX5_B-ALL paper titled "PAX5-driven Subtypes of B-cell Acute Lymphoblastic Leukemia" |
Illumina HiSeq 2000 |
128 |
| EGAD00001004461 |
RNAseq files (dataset 1 of 2) for Mullighan PAX5_B-ALL paper titled "PAX5-driven Subtypes of B-cell Acute Lymphoblastic Leukemia" |
Illumina HiSeq 2000 |
1083 |
| EGAD00001004463 |
RNAseq files (dataset 2 of 2) for Mullighan PAX5_B-ALL paper titled "PAX5-driven Subtypes of B-cell Acute Lymphoblastic Leukemia" |
Illumina HiSeq 2000 |
204 |
| EGAD00001004506 |
WES files for CHEN WTPDX paper titled "Forty-Five patient-derived xenografts capture the clinical and biological heterogeneity of Wilms tumor" |
Illumina HiSeq 2000 |
107 |
| EGAD00001004507 |
RNAseq files for CHEN WTPDX RNASEQ paper titled "Forty-Five patient-derived xenografts capture the clinical and biological heterogeneity of Wilms tumor" |
Illumina HiSeq 2000 |
88 |
| EGAD00001004559 |
WGBS files for PCGP NBL_MYCN_ATRX paper titled "MYCN Amplification and ATRX Mutations are Incompatible in Neuroblastoma" |
Illumina HiSeq 2000 |
24 |
| EGAD00001004566 |
WES files for Newman MAP3K8 melanoma paper titled "Clinical genome sequencing uncovers potentially targetable truncations and fusions of MAP3K8 in spitzoid and other melanomas" |
Illumina HiSeq 2000 |
2 |
| EGAD00001004567 |
RNASeq files for MAP3K8 melanoma paper titled "Clinical genome sequencing uncovers potentially targetable truncations and fusions of MAP3K8 in spitzoid and other melanomas" |
Illumina HiSeq 2000 |
2 |
| EGAD00001004579 |
WGS files for Newman MAP3K8 melanoma paper titled "Clinical genome sequencing uncovers potentially targetable truncations and fusions of MAP3K8 in spitzoid and other melanomas" |
Illumina HiSeq 2000 |
2 |
| EGAD00001004595 |
VALCAP files for Ma et al. (2019) Genome Biology (accepted) titled “Analysis of error profiles in deep next-generation sequencing data" |
HiSeq X Ten |
47 |
| EGAD00001005484 |
WXS files for Zhang PanNBL paper titled "Pan-neuroblastoma analysis reveals age- and signature-associated driver alterations" |
Illumina HiSeq 2000 |
634 |
| EGAD00001005506 |
WGS files for Mullighan_GL_reALL paper titled "Mutational landscape and patterns of clonal evolution in relapsed pediatric acute lymphoblastic leukemia" |
Illumina HiSeq 2000 |
99 |
| EGAD00001005509 |
WXS files for Mullighan_GL_reALL paper titled "Mutational landscape and patterns of clonal evolution in relapsed pediatric acute lymphoblastic leukemia" |
Illumina HiSeq 2000 |
276 |
| EGAD00001005510 |
RNAseq files for Mullighan_GL_reALL RNASEQ2 paper titled "Mutational landscape and patterns of clonal evolution in relapsed pediatric acute lymphoblastic leukemia" |
Illumina HiSeq 2000 |
34 |
| EGAD00001005511 |
RNASeq files for Mullighan_GL_reALL RNASEQ1 paper titled "Mutational landscape and patterns of clonal evolution in relapsed pediatric acute lymphoblastic leukemia" |
Illumina HiSeq 2000 |
81 |
| EGAD00001005729 |
WGS files for Mullighan BiTE WGS paper titled "Tumor intrinsic and extrinsic mechanisms of response and resistance to blinatumomab in relapsed/refractory acute lymphoblastic leukemia" |
Illumina HiSeq 2000 |
56 |
| EGAD00001005730 |
WXS files for Mullighan BiTE WXS paper titled "Tumor intrinsic and extrinsic mechanisms of response and resistance to blinatumomab in relapsed/refractory acute lymphoblastic leukemia" |
Illumina HiSeq 2000 |
60 |
| EGAD00001005731 |
RNAseq files for Mullighan BiTE RNASEQ1 paper titled "Tumor intrinsic and extrinsic mechanisms of response and resistance to blinatumomab in relapsed/refractory acute lymphoblastic leukemia" |
Illumina HiSeq 2000 |
41 |
| EGAD00001005732 |
lowinput RNASEQ files for Mullighan BiTE RNASEQ2 paper titled "Tumor intrinsic and extrinsic mechanisms of response and resistance to blinatumomab in relapsed/refractory acute lymphoblastic leukemia" |
Illumina HiSeq 2000 |
10 |
| EGAD00001005733 |
single cell RNASEQ files for Mullighan BiTE RNASEQ3 paper titled "Tumor intrinsic and extrinsic mechanisms of response and resistance to blinatumomab in relapsed/refractory acute lymphoblastic leukemia" |
Illumina HiSeq 2000 |
10 |
| EGAD00001005936 |
WXS files for Mullighan Leventaki ALCL paper titled "Integrative molecular analysis of pediatric Anaplastic large cell lymphoma reveals subtypes with distinct immune suppression signatures." |
Illumina HiSeq 2000 |
42 |
| EGAD00001005951 |
RNASeq files for Mullighan Leventaki ALCL Project paper titled "Integrative molecular analysis of pediatric Anaplastic large cell lymphoma reveals subtypes with distinct immune suppression signatures." |
Illumina HiSeq 2000 |
32 |
| EGAD00001006196 |
Additional Neuroblastoma whole genome sequencing data |
Illumina HiSeq 2000 |
3 |
| EGAD00001006344 |
Additional Neuroblastoma whole genome sequencing data |
|
30 |
| EGAD00001006380 |
RNASeq files for paper titled "Molecular classification improves risk assessment in adult B-lineage ALL: Patients on the international UKALLXII-ECOG2993 trial." |
Illumina HiSeq 2000 |
57 |
| EGAD00001006398 |
ChIP-Seq files accompanying the paper titled "Identification of Therapeutic Targets in Rhabdomyosarcoma Through Integrated Genomic, Epigenomic, and Proteomic Analyses". |
Illumina HiSeq 2000 |
242 |
| EGAD00001006442 |
WGS files for paper titled "Integrative Analysis of Pediatric Acute Leukemia Identifies Acute Myeloid/T-Lymphoblastic Leukemia Subtype that Spans a T Lineage and Myeloid Continuum with Distinct Prognoses" |
Illumina HiSeq 2000 |
184 |
| EGAD00001006443 |
WXS files for paper titled "Integrative Analysis of Pediatric Acute Leukemia Identifies Acute Myeloid/T-Lymphoblastic Leukemia Subtype that Spans a T Lineage and Myeloid Continuum with Distinct Prognoses" |
Illumina HiSeq 2000 |
260 |
| EGAD00001006444 |
RNASeq files for paper titled "Integrative Analysis of Pediatric Acute Leukemia Identifies Acute Myeloid/T-Lymphoblastic Leukemia Subtype that Spans a T Lineage and Myeloid Continuum with Distinct Prognoses" |
Illumina HiSeq 2000 |
132 |
| EGAD00001006609 |
RNASeq files for paper titled "Prognostic and therapeutic significance of leukemia subtypes and minimal residual disease measurements in pediatric acute lymphoblastic leukemia treated with contemporary risk-directed trial: a cohort study" |
Illumina HiSeq 2000,Illumina NovaSeq 6000 |
122 |
| EGAD00001006674 |
RNASeq files for paper titled "The Acquisition of Molecular Drivers in Pediatric Therapy-Related Myeloid Neoplasms" |
Illumina HiSeq 2000 |
56 |
| EGAD00001006675 |
WXS files for paper titled "The Acquisition of Molecular Drivers in Pediatric Therapy-Related Myeloid Neoplasms" |
Illumina HiSeq 2000 |
137 |
| EGAD00001006676 |
WGS files for paper titled "The Acquisition of Molecular Drivers in Pediatric Therapy-Related Myeloid Neoplasms" |
Illumina HiSeq 2000 |
35 |
| EGAD00001006678 |
HiC files for GenomePaint paper titled "Exploration of coding and non-coding variants in cancer using GenomePaint." |
Illumina HiSeq 2000 |
8 |
| EGAD00001006679 |
WGS files for GenomePaint paper titled "Exploration of coding and non-coding variants in cancer using GenomePaint." |
Illumina HiSeq 2000 |
1 |
| EGAD00001006680 |
RNASeq files for GenomePaint paper titled "Exploration of coding and non-coding variants in cancer using GenomePaint." |
Illumina HiSeq 2000 |
1 |
| EGAD00001006905 |
Whole genome sequencing of 29 samples |
Illumina NovaSeq 6000 |
29 |
| EGAD00001006954 |
iAMP21 WGS, total of 224 samples |
HiSeq X Ten,Illumina HiSeq 2500,Illumina NovaSeq 6000 |
224 |
| EGAD00001007530 |
RNAseq data of total TXVI samples |
Illumina HiSeq 2000,Illumina HiSeq 2500,Illumina HiSeq 4000,Illumina NovaSeq 6000,NextSeq 550 |
227 |
| EGAD00001007570 |
WGS data set of 11 xenograft samples, Degradation of Janus kinases in CRLF2-rearranged acute lymphoblastic leukemia |
Illumina NovaSeq 6000 |
11 |
| EGAD00001007577 |
RNAseq samples from the iAMP21 study |
Illumina HiSeq 2500,Illumina HiSeq 4000,NextSeq 550 |
88 |
| EGAD00001007670 |
RNAseq data set of BCL11B, 519 samples |
Illumina HiSeq 2500,Illumina HiSeq 4000,Illumina NovaSeq 6000,NextSeq 550 |
519 |
| EGAD00001007863 |
BCL11B PacBio data set, 4 samples |
Sequel |
4 |
| EGAD00001007966 |
WGS data set used in the study, 2 samples |
Illumina HiSeq 2500 |
2 |
| EGAD00001007967 |
RNAseq data set used in the study, 10 samples |
Illumina HiSeq 2500 |
10 |
| EGAD00001007968 |
WGBS data set used in the study, 96 samples |
Illumina HiSeq 2000,Illumina NovaSeq 6000 |
96 |
| EGAD00001008134 |
RNAseq data set, panALL study, 16 samples |
Illumina HiSeq 2500,Illumina NovaSeq 6000 |
16 |
| EGAD00001008193 |
Exome sequencing of panALL exome data set, total of 1948 samples |
Illumina HiSeq 2500 |
598 |
| EGAD00001008268 |
panALL exome sequencing, data set2, 700 samples |
Illumina HiSeq 2500 |
700 |
| EGAD00001008290 |
panALL exome data set3, 650 samples |
Illumina HiSeq 2500 |
650 |
| EGAD00001008407 |
RNAseq files for Klco RPAML paper titled "UBTF tandem duplication defines High-risk Pediatric Acute Myeloid Leukemia" |
Illumina HiSeq 2000 |
173 |
| EGAD00001008413 |
WGS files for Klco RPAML paper titled "UBTF tandem duplication defines High-risk Pediatric Acute Myeloid Leukemia" |
Illumina HiSeq 2000 |
158 |
| EGAD00001008446 |
Remaining WGS files for paper titled "UBTF tandem duplication defines High-risk Pediatric Acute Myeloid Leukemia" |
Illumina HiSeq 2000 |
10 |
| EGAD00001008600 |
WGS files for Genomic Landscape ALL paper titled "The genomic landscape of pediatric acute lymphoblastic leukemia" |
Illumina HiSeq 2000 |
278 |
| EGAD00001008824 |
RNASeq files for Roussel-MPBRG paper titled "Combination of ribociclib and gemcitabine for the treatment of medulloblastoma" |
Illumina HiSeq 2000 |
98 |
| EGAD00001008842 |
RNASeq files for Roussel paper titled "Combination of CDK4/6 with BET-bromodomain and PI3K/mTOR inhibitors in medulloblastoma in vitro and in vivo" |
Illumina HiSeq 2000 |
39 |
| EGAD00001009394 |
Additional RNASeq files for Roussel paper titled "Combination of CDK4/6 with BET-bromodomain and PI3K/mTOR inhibitors in medulloblastoma in vitro and in vivo" |
Illumina HiSeq 2000 |
19 |
| EGAD00001009787 |
WGS files for CIC paper titled "Malignant progression of an ancestral bone marrow clone harboring a CIC-NUTM2A fusion in isolated myeloid sarcoma" |
Illumina HiSeq 2000 |
3 |
| EGAD00001009788 |
RNASeq files for CIC paper titled "Malignant progression of an ancestral bone marrow clone harboring a CIC-NUTM2A fusion in isolated myeloid sarcoma" |
Illumina HiSeq 2000 |
2 |
| EGAD00010000462 |
SJLGG Case samples using Gene Expression Array |
Affymetrix_U133v2 |
75 |
| EGAD00010000596 |
PCGP Ph-likeALL GEA |
|
837 |
| EGAD00010000598 |
PCGP Ph-likeALL SNP6 |
|
1724 |
| EGAD00010000696 |
PCGP ETP ALL SNP6 |
|
0 |
| EGAD00010000698 |
PCGP INF ALL SNP6 |
|
0 |
| EGAD00010001300 |
Medulloblastoma expression profiling |
Affymetrix expression array |
146 |
| EGAD00010001319 |
Medulloblastoma methylation profiling |
Illumina Infinium HumanMethylation450 BeadChip |
345 |
| EGAD00010001596 |
DNA methylation data from patient RMS tumor samples from Illumina 450 K arays |
Illlimuna EPIC 450 K |
32 |
| EGAD00010001635 |
Over 1.87 million SNP and CNV loci are screened by Affymetrix SNP 6.0 array |
|
415 |
| EGAD00010001636 |
Over 2.5 million SNP and CNV loci are screened by Illumina Infinium Omni2.5Exome-8 Kit |
|
196 |
| EGAD00010001637 |
Over 1.87 million SNP and CNV loci are screened by Affymetrix SNP 6.0 array |
|
539 |
| EGAD00010001638 |
Over 2.5 million SNP and CNV loci are screened by Illumina Infinium Omni2.5Exome-8 Kit |
|
262 |
| EGAD00010001813 |
Over 1.87 million SNP and CNV loci are screened by Affymetrix SNP 6.0 array |
Affymetrix SNP 6.0 array |
91 |
| EGAD00010001814 |
Over 1.87 million SNP and CNV loci are screened by Affymetrix SNP 6.0 array |
Affymetrix SNP 6.0 array |
195 |
