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RNA-Seq data for paper titled 'Genomic Landscape of Pediatric Myelodysplastic Syndromes'

When available (25 primary MDS, 12 MDS/MPN, and 6 AML-MRC cases), high quality RNA (stranded-total) was submitted for RNA-seq. RNA was extracted from bulk myeloid cells which was used as the tumor population. Files uploaded are mapped BAM files.

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DAC to obtain datasets submitted by St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project

This document refers to a data set, which has been submitted to the European Genome Archive (EGA) for the restricted access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by the St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project Steering Committee. There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by our Data Access Committee, called the St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project Steering Committee. For an overview of the guidelines and information concerning data access, such as general principles, application procedure, and assessment criteria, please visit http://explore.pediatriccancergenomeproject.org/dataAccess/GuidelinesAndInformation.pdf. For the data access agreement or an application, please visit http://explore.pediatriccancergenomeproject.org/dataAccess/ApplicationForm.pdf. For all other inquiries, please email PCGP_data_request@stjude.org. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002202 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001772719 bam 11.4 GB
EGAF00001772720 bam 8.7 GB
EGAF00001772721 bam 8.0 GB
EGAF00001772722 bam 6.1 GB
EGAF00001772729 bam 5.5 GB
EGAF00001772730 bam 6.1 GB
EGAF00001772731 bam 8.2 GB
EGAF00001772732 bam 8.7 GB
EGAF00001772733 bam 8.9 GB
EGAF00001772734 bam 9.0 GB
EGAF00001772735 bam 8.4 GB
EGAF00001772736 bam 8.5 GB
EGAF00001772737 bam 8.9 GB
EGAF00001772738 bam 8.7 GB
EGAF00001772739 bam 6.2 GB
EGAF00001772740 bam 8.6 GB
EGAF00001772741 bam 8.5 GB
EGAF00001772742 bam 7.8 GB
EGAF00001772743 bam 14.8 GB
EGAF00001772744 bam 7.9 GB
EGAF00001772745 bam 11.5 GB
EGAF00001772746 bam 9.3 GB
EGAF00001772747 bam 9.1 GB
EGAF00001772748 bam 7.3 GB
EGAF00001772749 bam 12.9 GB
EGAF00001772750 bam 8.2 GB
EGAF00001772751 bam 7.0 GB
EGAF00001772752 bam 6.8 GB
EGAF00001772753 bam 17.3 GB
EGAF00001772779 bam 16.3 GB
EGAF00001772780 bam 5.8 GB
EGAF00001772781 bam 6.7 GB
EGAF00001772782 bam 7.8 GB
EGAF00001772783 bam 7.2 GB
EGAF00001772784 bam 7.2 GB
EGAF00001772785 bam 6.3 GB
EGAF00001772786 bam 7.4 GB
EGAF00001772787 bam 4.3 GB
EGAF00001772788 bam 7.5 GB
EGAF00001772789 bam 14.6 GB
EGAF00001772790 bam 23.9 GB
EGAF00001772791 bam 4.9 GB
EGAF00001772792 bam 6.2 GB
43 Files (384.5 GB)