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RNA-Seq data for paper titled 'Genomic Landscape of Pediatric Myelodysplastic Syndromes'

When available (25 primary MDS, 12 MDS/MPN, and 6 AML-MRC cases), high quality RNA (stranded-total) was submitted for RNA-seq. RNA was extracted from bulk myeloid cells which was used as the tumor population. Files uploaded are mapped BAM files.

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DUO:0000042
version: 2019-01-07

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

DAC to obtain datasets submitted by St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project

Learn more about the PCGP, disease types, publications, the PCGP Data Access Committee, and instructions to access data via EGA: https://pecan.stjude.cloud/permalink/pcgp Complete the attached Data Access Agreement (DAA), adhering to the following guidance, and return it to pcgpdaccoordinator@stjude.org: - Requests must be made for individual datasets (EGAD ID), not full studies (EGAS ID). - A separate DAA must be submitted for each dataset AND all original pages must be included. - The first listed applicant should be the Principal Investigator, Head of Department, or Department Chair leading the project. This should not be a staff scientist or postdoctoral researcher. - The email address used to access the dataset(s) must be a work-related email, not a personal email. - The signature of the “Institutional or Administrative Authority” must be an individual with the authority to sign documents on behalf of the requesting institution. This individual is known as the Authorized Organizational Representative (AOR) and is typically someone in the requesting institution's legal department or grants office. Heads/Chairs of Departments cannot sign as the Institutional or Administrative Authority. - Not adhering to these policies will delay your application. Once we receive your completed application, the DAC review typically takes approximately 15-20 business days. - If we do not receive a completed DAA from you within 90 days, we will consider this application closed and reject your request in the EGA portal. You may resubmit later as needed.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002202 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00001772719 bam 11.4 GB Report
EGAF00001772720 bam 8.7 GB Report
EGAF00001772721 bam 8.0 GB Report
EGAF00001772722 bam 6.1 GB Report
EGAF00001772729 bam 5.5 GB Report
EGAF00001772730 bam 6.1 GB Report
EGAF00001772731 bam 8.2 GB Report
EGAF00001772732 bam 8.7 GB Report
EGAF00001772733 bam 8.9 GB Report
EGAF00001772734 bam 9.0 GB Report
EGAF00001772735 bam 8.4 GB Report
EGAF00001772736 bam 8.5 GB Report
EGAF00001772737 bam 8.9 GB Report
EGAF00001772738 bam 8.7 GB Report
EGAF00001772739 bam 6.2 GB Report
EGAF00001772740 bam 8.6 GB Report
EGAF00001772741 bam 8.5 GB Report
EGAF00001772742 bam 7.8 GB Report
EGAF00001772743 bam 14.8 GB Report
EGAF00001772744 bam 7.9 GB Report
EGAF00001772745 bam 11.5 GB Report
EGAF00001772746 bam 9.3 GB Report
EGAF00001772747 bam 9.1 GB Report
EGAF00001772748 bam 7.3 GB Report
EGAF00001772749 bam 12.9 GB Report
EGAF00001772750 bam 8.2 GB Report
EGAF00001772751 bam 7.0 GB Report
EGAF00001772752 bam 6.8 GB Report
EGAF00001772753 bam 17.3 GB Report
EGAF00001772779 bam 16.3 GB Report
EGAF00001772780 bam 5.8 GB Report
EGAF00001772781 bam 6.7 GB Report
EGAF00001772782 bam 7.8 GB Report
EGAF00001772783 bam 7.2 GB Report
EGAF00001772784 bam 7.2 GB Report
EGAF00001772785 bam 6.3 GB Report
EGAF00001772786 bam 7.4 GB Report
EGAF00001772787 bam 4.3 GB Report
EGAF00001772788 bam 7.5 GB Report
EGAF00001772789 bam 14.6 GB Report
EGAF00001772790 bam 23.9 GB Report
EGAF00001772791 bam 4.9 GB Report
EGAF00001772792 bam 6.2 GB Report
43 Files (384.5 GB)