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Whole exome sequencing files for St. Jude Clinical Pilot

This dataset contains whole exome sequencing BAM files for 78 tumor-normal pairs (a total of 156 samples) used in the St. Jude Clinical Pilot. Mapping was performed using BWA. This dataset accompanies the paper "Clinical Cancer Genomic Profiling by Three-Platform Sequencing of Whole Genome, Whole Exome and Transcriptome"

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DUO:0000042
version: 2019-01-07

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

DAC to obtain datasets submitted by St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project

Learn more about the PCGP, disease types, publications, the PCGP Data Access Committee, and instructions to access data via EGA: https://pecan.stjude.cloud/permalink/pcgp Complete the attached Data Access Agreement (DAA), adhering to the following guidance, and return it to pcgpdaccoordinator@stjude.org: - Requests must be made for individual datasets (EGAD ID), not full studies (EGAS ID). - A separate DAA must be submitted for each dataset AND all original pages must be included. - The first listed applicant should be the Principal Investigator, Head of Department, or Department Chair leading the project. This should not be a staff scientist or postdoctoral researcher. - The email address used to access the dataset(s) must be a work-related email, not a personal email. - The signature of the “Institutional or Administrative Authority” must be an individual with the authority to sign documents on behalf of the requesting institution. This individual is known as the Authorized Organizational Representative (AOR) and is typically someone in the requesting institution's legal department or grants office. Heads/Chairs of Departments cannot sign as the Institutional or Administrative Authority. - Not adhering to these policies will delay your application. Once we receive your completed application, the DAC review typically takes approximately 15-20 business days. - If we do not receive a completed DAA from you within 90 days, we will consider this application closed and reject your request in the EGA portal. You may resubmit later as needed.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002217 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00002059093 bam 7.0 GB Report
EGAF00002059094 bam 10.9 GB Report
EGAF00002059095 bam 13.4 GB Report
EGAF00002059096 bam 14.7 GB Report
EGAF00002059097 bam 14.9 GB Report
EGAF00002059098 bam 10.4 GB Report
EGAF00002059099 bam 12.3 GB Report
EGAF00002059100 bam 17.1 GB Report
EGAF00002059102 bam 11.9 GB Report
EGAF00002059103 bam 13.8 GB Report
EGAF00002059104 bam 21.4 GB Report
EGAF00002059105 bam 11.6 GB Report
EGAF00002059106 bam 12.8 GB Report
EGAF00002059107 bam 8.5 GB Report
EGAF00002059108 bam 10.2 GB Report
EGAF00002059109 bam 9.6 GB Report
EGAF00002059110 bam 7.4 GB Report
EGAF00002059111 bam 11.6 GB Report
EGAF00002059112 bam 11.5 GB Report
EGAF00002059113 bam 9.9 GB Report
EGAF00002059114 bam 11.2 GB Report
EGAF00002059115 bam 8.0 GB Report
EGAF00002059116 bam 12.8 GB Report
EGAF00002059117 bam 15.1 GB Report
EGAF00002059118 bam 9.4 GB Report
EGAF00002059119 bam 12.0 GB Report
EGAF00002059120 bam 14.2 GB Report
EGAF00002059121 bam 11.5 GB Report
EGAF00002059122 bam 11.4 GB Report
EGAF00002059123 bam 18.7 GB Report
EGAF00002059124 bam 17.5 GB Report
EGAF00002059125 bam 9.4 GB Report
EGAF00002059126 bam 12.2 GB Report
EGAF00002059127 bam 10.3 GB Report
EGAF00002059128 bam 10.7 GB Report
EGAF00002059129 bam 8.1 GB Report
EGAF00002059130 bam 6.9 GB Report
EGAF00002059131 bam 8.5 GB Report
EGAF00002059132 bam 5.6 GB Report
EGAF00002059133 bam 20.2 GB Report
EGAF00002059134 bam 21.4 GB Report
EGAF00002059135 bam 14.5 GB Report
EGAF00002059136 bam 11.3 GB Report
EGAF00002059137 bam 14.3 GB Report
EGAF00002059138 bam 8.9 GB Report
EGAF00002059139 bam 14.4 GB Report
EGAF00002059140 bam 15.8 GB Report
EGAF00002059141 bam 18.1 GB Report
EGAF00002059142 bam 34.8 GB Report
EGAF00002059143 bam 14.5 GB Report
EGAF00002059144 bam 11.7 GB Report
EGAF00002059145 bam 12.0 GB Report
EGAF00002059146 bam 11.9 GB Report
EGAF00002059147 bam 14.0 GB Report
EGAF00002059148 bam 10.2 GB Report
EGAF00002059149 bam 10.7 GB Report
EGAF00002059150 bam 9.6 GB Report
EGAF00002059151 bam 12.5 GB Report
EGAF00002059152 bam 21.8 GB Report
EGAF00002059153 bam 8.9 GB Report
EGAF00002059154 bam 6.4 GB Report
EGAF00002059155 bam 13.6 GB Report
EGAF00002059156 bam 11.2 GB Report
EGAF00002059157 bam 6.1 GB Report
EGAF00002059158 bam 14.3 GB Report
EGAF00002059159 bam 22.2 GB Report
EGAF00002059160 bam 17.1 GB Report
EGAF00002059161 bam 13.9 GB Report
EGAF00002059162 bam 12.1 GB Report
EGAF00002059163 bam 11.9 GB Report
EGAF00002059164 bam 9.9 GB Report
EGAF00002059165 bam 23.4 GB Report
EGAF00002059166 bam 21.2 GB Report
EGAF00002059167 bam 13.1 GB Report
EGAF00002059168 bam 10.4 GB Report
EGAF00002059169 bam 11.5 GB Report
EGAF00002059170 bam 11.4 GB Report
EGAF00002059171 bam 35.0 GB Report
EGAF00002059172 bam 15.8 GB Report
EGAF00002059173 bam 18.9 GB Report
EGAF00002059174 bam 37.4 GB Report
EGAF00002059175 bam 16.7 GB Report
EGAF00002059176 bam 11.3 GB Report
EGAF00002059177 bam 10.4 GB Report
EGAF00002059178 bam 12.2 GB Report
EGAF00002059179 bam 12.4 GB Report
EGAF00002059180 bam 16.1 GB Report
EGAF00002059181 bam 8.8 GB Report
EGAF00002059182 bam 11.0 GB Report
EGAF00002059183 bam 14.6 GB Report
EGAF00002059184 bam 11.5 GB Report
EGAF00002059185 bam 15.1 GB Report
EGAF00002059186 bam 9.8 GB Report
EGAF00002059187 bam 20.0 GB Report
EGAF00002059188 bam 12.2 GB Report
EGAF00002059189 bam 26.8 GB Report
EGAF00002059190 bam 9.1 GB Report
EGAF00002059191 bam 25.2 GB Report
EGAF00002059192 bam 8.7 GB Report
EGAF00002059193 bam 27.2 GB Report
EGAF00002059194 bam 11.3 GB Report
EGAF00002059195 bam 35.8 GB Report
EGAF00002059196 bam 7.9 GB Report
EGAF00002059197 bam 15.5 GB Report
EGAF00002059198 bam 15.5 GB Report
EGAF00002059199 bam 11.8 GB Report
EGAF00002059200 bam 13.9 GB Report
EGAF00002059201 bam 15.3 GB Report
EGAF00002059202 bam 15.1 GB Report
EGAF00002059203 bam 13.1 GB Report
EGAF00002059204 bam 17.2 GB Report
EGAF00002059205 bam 11.7 GB Report
EGAF00002059206 bam 8.0 GB Report
EGAF00002059207 bam 11.6 GB Report
EGAF00002059208 bam 8.3 GB Report
EGAF00002059209 bam 11.4 GB Report
EGAF00002059210 bam 6.9 GB Report
EGAF00002059211 bam 18.4 GB Report
EGAF00002059212 bam 38.5 GB Report
EGAF00002059213 bam 11.6 GB Report
EGAF00002059214 bam 9.8 GB Report
EGAF00002059215 bam 18.6 GB Report
EGAF00002059216 bam 9.3 GB Report
EGAF00002059217 bam 7.2 GB Report
EGAF00002059218 bam 14.3 GB Report
EGAF00002059219 bam 13.8 GB Report
EGAF00002059220 bam 12.0 GB Report
EGAF00002059221 bam 8.3 GB Report
EGAF00002059222 bam 7.2 GB Report
EGAF00002059223 bam 7.4 GB Report
EGAF00002059224 bam 13.2 GB Report
EGAF00002059225 bam 5.9 GB Report
EGAF00002059226 bam 10.9 GB Report
EGAF00002059227 bam 14.9 GB Report
EGAF00002059228 bam 16.9 GB Report
EGAF00002059229 bam 14.0 GB Report
EGAF00002059230 bam 22.7 GB Report
EGAF00002059231 bam 14.2 GB Report
EGAF00002059232 bam 16.9 GB Report
EGAF00002059233 bam 18.5 GB Report
EGAF00002059234 bam 19.7 GB Report
EGAF00002059235 bam 12.3 GB Report
EGAF00002059236 bam 14.4 GB Report
EGAF00002059237 bam 19.7 GB Report
EGAF00002059238 bam 8.9 GB Report
EGAF00002059239 bam 11.6 GB Report
EGAF00002059240 bam 13.4 GB Report
EGAF00002059241 bam 21.5 GB Report
EGAF00002059242 bam 7.2 GB Report
EGAF00002059243 bam 15.8 GB Report
EGAF00002059244 bam 38.7 GB Report
EGAF00002059245 bam 8.0 GB Report
EGAF00002059246 bam 6.3 GB Report
EGAF00002059247 bam 7.3 GB Report
EGAF00002059248 bam 6.5 GB Report
155 Files (2.1 TB)