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RNA-Seq files for St. Jude Clinical Pilot

This dataset contains whole genome sequencing BAM files for 78 tumor-normal pairs (a total of 156 samples) used in the St. Jude Clinical Pilot. Mapping was performed using BWA. This dataset accompanies the paper "Clinical Cancer Genomic Profiling by Three-Platform Sequencing of Whole Genome, Whole Exome and Transcriptome"

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DUO:0000042
version: 2019-01-07

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

DAC to obtain datasets submitted by St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project

Learn more about the PCGP, disease types, publications, the PCGP Data Access Committee, and instructions to access data via EGA: https://pecan.stjude.cloud/permalink/pcgp Complete the attached Data Access Agreement (DAA), adhering to the following guidance, and return it to pcgpdaccoordinator@stjude.org: - Requests must be made for individual datasets (EGAD ID), not full studies (EGAS ID). - A separate DAA must be submitted for each dataset AND all original pages must be included. - The first listed applicant should be the Principal Investigator, Head of Department, or Department Chair leading the project. This should not be a staff scientist or postdoctoral researcher. - The email address used to access the dataset(s) must be a work-related email, not a personal email. - The signature of the “Institutional or Administrative Authority” must be an individual with the authority to sign documents on behalf of the requesting institution. This individual is known as the Authorized Organizational Representative (AOR) and is typically someone in the requesting institution's legal department or grants office. Heads/Chairs of Departments cannot sign as the Institutional or Administrative Authority. - Not adhering to these policies will delay your application. Once we receive your completed application, the DAC review typically takes approximately 15-20 business days. - If we do not receive a completed DAA from you within 90 days, we will consider this application closed and reject your request in the EGA portal. You may resubmit later as needed.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002217 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00002057677 bam 5.4 GB Report
EGAF00002057678 bam 7.5 GB Report
EGAF00002057679 bam 5.7 GB Report
EGAF00002057680 bam 5.8 GB Report
EGAF00002057682 bam 11.2 GB Report
EGAF00002057683 bam 2.8 GB Report
EGAF00002057684 bam 7.1 GB Report
EGAF00002057685 bam 10.1 GB Report
EGAF00002057686 bam 6.3 GB Report
EGAF00002057687 bam 4.0 GB Report
EGAF00002057688 bam 4.0 GB Report
EGAF00002057689 bam 5.6 GB Report
EGAF00002057690 bam 6.8 GB Report
EGAF00002057691 bam 5.9 GB Report
EGAF00002057692 bam 6.1 GB Report
EGAF00002057693 bam 8.5 GB Report
EGAF00002057694 bam 5.6 GB Report
EGAF00002057695 bam 7.2 GB Report
EGAF00002057696 bam 6.8 GB Report
EGAF00002057697 bam 10.8 GB Report
EGAF00002057698 bam 6.4 GB Report
EGAF00002057699 bam 7.9 GB Report
EGAF00002057700 bam 8.4 GB Report
EGAF00002057701 bam 5.0 GB Report
EGAF00002057702 bam 10.1 GB Report
EGAF00002057703 bam 6.5 GB Report
EGAF00002057704 bam 8.4 GB Report
EGAF00002057705 bam 6.0 GB Report
EGAF00002057706 bam 11.2 GB Report
EGAF00002057707 bam 5.2 GB Report
EGAF00002057708 bam 6.4 GB Report
EGAF00002057709 bam 9.5 GB Report
EGAF00002057710 bam 5.1 GB Report
EGAF00002057711 bam 11.6 GB Report
EGAF00002057712 bam 13.7 GB Report
EGAF00002057713 bam 8.3 GB Report
EGAF00002057714 bam 5.9 GB Report
EGAF00002057715 bam 7.9 GB Report
EGAF00002057716 bam 8.4 GB Report
EGAF00002057717 bam 4.5 GB Report
EGAF00002057718 bam 6.2 GB Report
EGAF00002057719 bam 8.1 GB Report
EGAF00002057720 bam 9.0 GB Report
EGAF00002057721 bam 7.7 GB Report
EGAF00002057722 bam 5.6 GB Report
EGAF00002057723 bam 7.7 GB Report
EGAF00002057724 bam 42.9 GB Report
EGAF00002057725 bam 45.6 GB Report
EGAF00002057726 bam 9.0 GB Report
EGAF00002057727 bam 8.0 GB Report
EGAF00002057728 bam 9.6 GB Report
EGAF00002057729 bam 5.6 GB Report
EGAF00002057730 bam 6.9 GB Report
EGAF00002057731 bam 11.3 GB Report
EGAF00002057732 bam 12.5 GB Report
EGAF00002057733 bam 4.6 GB Report
EGAF00002057734 bam 5.9 GB Report
EGAF00002057735 bam 6.3 GB Report
EGAF00002057736 bam 5.8 GB Report
EGAF00002057737 bam 7.3 GB Report
EGAF00002057738 bam 5.3 GB Report
EGAF00002057739 bam 14.7 GB Report
EGAF00002057740 bam 14.1 GB Report
EGAF00002057741 bam 9.4 GB Report
EGAF00002057742 bam 7.0 GB Report
EGAF00002057743 bam 10.2 GB Report
EGAF00002057744 bam 7.9 GB Report
EGAF00002057745 bam 12.1 GB Report
EGAF00002057746 bam 7.4 GB Report
EGAF00002057747 bam 8.9 GB Report
EGAF00002057748 bam 9.8 GB Report
EGAF00002057749 bam 7.3 GB Report
EGAF00002057750 bam 6.3 GB Report
EGAF00002057751 bam 5.5 GB Report
EGAF00002057752 bam 4.6 GB Report
EGAF00002057753 bam 5.2 GB Report
EGAF00002057754 bam 5.6 GB Report
77 Files (656.8 GB)